Literature DB >> 33441825

Foveal avascular zone segmentation in optical coherence tomography angiography images using a deep learning approach.

Reza Mirshahi1, Pasha Anvari1, Hamid Riazi-Esfahani2, Mahsa Sardarinia1, Masood Naseripour1,3, Khalil Ghasemi Falavarjani4,5.   

Abstract

The purpose of this study was to introduce a new deep learning (DL) model for segmentation of the fovea avascular zone (FAZ) in en face optical coherence tomography angiography (OCTA) and compare the results with those of the device's built-in software and manual measurements in healthy subjects and diabetic patients. In this retrospective study, FAZ borders were delineated in the inner retinal slab of 3 × 3 enface OCTA images of 131 eyes of 88 diabetic patients and 32 eyes of 18 healthy subjects. To train a deep convolutional neural network (CNN) model, 126 enface OCTA images (104 eyes with diabetic retinopathy and 22 normal eyes) were used as training/validation dataset. Then, the accuracy of the model was evaluated using a dataset consisting of OCTA images of 10 normal eyes and 27 eyes with diabetic retinopathy. The CNN model was based on Detectron2, an open-source modular object detection library. In addition, automated FAZ measurements were conducted using the device's built-in commercial software, and manual FAZ delineation was performed using ImageJ software. Bland-Altman analysis was used to show 95% limit of agreement (95% LoA) between different methods. The mean dice similarity coefficient of the DL model was 0.94 ± 0.04 in the testing dataset. There was excellent agreement between automated, DL model and manual measurements of FAZ in healthy subjects (95% LoA of - 0.005 to 0.026 mm2 between automated and manual measurement and 0.000 to 0.009 mm2 between DL and manual FAZ area). In diabetic eyes, the agreement between DL and manual measurements was excellent (95% LoA of - 0.063 to 0.095), however, there was a poor agreement between the automated and manual method (95% LoA of - 0.186 to 0.331). The presence of diabetic macular edema and intraretinal cysts at the fovea were associated with erroneous FAZ measurements by the device's built-in software. In conclusion, the DL model showed an excellent accuracy in detection of FAZ border in enfaces OCTA images of both diabetic patients and healthy subjects. The DL and manual measurements outperformed the automated measurements of the built-in software.

Entities:  

Year:  2021        PMID: 33441825      PMCID: PMC7806603          DOI: 10.1038/s41598-020-80058-x

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  17 in total

1.  Measurement of Foveal Avascular Zone Dimensions and its Reliability in Healthy Eyes Using Optical Coherence Tomography Angiography.

Authors:  Abtin Shahlaee; Maria Pefkianaki; Jason Hsu; Allen C Ho
Journal:  Am J Ophthalmol       Date:  2015-09-28       Impact factor: 5.258

2.  Image artefacts in swept-source optical coherence tomography angiography.

Authors:  Khalil Ghasemi Falavarjani; Mayss Al-Sheikh; Handan Akil; Srinivas R Sadda
Journal:  Br J Ophthalmol       Date:  2016-07-20       Impact factor: 4.638

3.  Reproducibility and repeatability of foveal avascular zone area measurements using swept-source optical coherence tomography angiography in healthy subjects.

Authors:  Rodolfo Mastropasqua; Lisa Toto; Peter A Mattei; Marta Di Nicola; Isaia A L Zecca; Paolo Carpineto; Luca Di Antonio
Journal:  Eur J Ophthalmol       Date:  2016-09-09       Impact factor: 2.597

4.  Automated Measurement of the Foveal Avascular Zone in Swept-Source Optical Coherence Tomography Angiography Images.

Authors:  Hirokazu Ishii; Takuhei Shoji; Yuji Yoshikawa; Junji Kanno; Hisashi Ibuki; Kei Shinoda
Journal:  Transl Vis Sci Technol       Date:  2019-05-30       Impact factor: 3.283

5.  Mask R-CNN.

Authors:  Kaiming He; Georgia Gkioxari; Piotr Dollar; Ross Girshick
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2018-06-05       Impact factor: 6.226

6.  Assessing the Accuracy of Foveal Avascular Zone Measurements Using Optical Coherence Tomography Angiography: Segmentation and Scaling.

Authors:  Rachel Linderman; Alexander E Salmon; Margaret Strampe; Madia Russillo; Jamil Khan; Joseph Carroll
Journal:  Transl Vis Sci Technol       Date:  2017-06-09       Impact factor: 3.283

7.  Optical coherence tomography angiography of the retina and choroid; current applications and future directions.

Authors:  Khalil Ghasemi Falavarjani; David Sarraf
Journal:  J Curr Ophthalmol       Date:  2017-03-21

8.  Impact of correct anatomical slab segmentation on foveal avascular zone measurements by optical coherence tomography angiography in healthy adults.

Authors:  Felix Rommel; Fynn Siegfried; Maximilian Kurz; Max Philipp Brinkmann; Matthias Rothe; Martin Rudolf; Salvatore Grisanti; Mahdy Ranjbar
Journal:  J Curr Ophthalmol       Date:  2018-03-20

9.  Automatic segmentation of the foveal avascular zone in ophthalmological OCT-A images.

Authors:  Macarena Díaz; Jorge Novo; Paula Cutrín; Francisco Gómez-Ulla; Manuel G Penedo; Marcos Ortega
Journal:  PLoS One       Date:  2019-02-22       Impact factor: 3.240

10.  Automatic quantification of superficial foveal avascular zone in optical coherence tomography angiography implemented with deep learning.

Authors:  Menglin Guo; Mei Zhao; Allen M Y Cheong; Houjiao Dai; Andrew K C Lam; Yongjin Zhou
Journal:  Vis Comput Ind Biomed Art       Date:  2019-12-09
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  6 in total

1.  A lightweight deep learning model for automatic segmentation and analysis of ophthalmic images.

Authors:  Parmanand Sharma; Takahiro Ninomiya; Kazuko Omodaka; Naoki Takahashi; Takehiro Miya; Noriko Himori; Takayuki Okatani; Toru Nakazawa
Journal:  Sci Rep       Date:  2022-05-20       Impact factor: 4.996

2.  Application of Improved U-Net Convolutional Neural Network for Automatic Quantification of the Foveal Avascular Zone in Diabetic Macular Ischemia.

Authors:  Yongan Meng; Hailei Lan; Yuqian Hu; Zailiang Chen; Pingbo Ouyang; Jing Luo
Journal:  J Diabetes Res       Date:  2022-02-26       Impact factor: 4.011

3.  Retinal Microvasculature and Conjunctival Vessel Alterations in Patients With Systemic Lupus Erythematosus-An Optical Coherence Tomography Angiography Study.

Authors:  Wen-Qing Shi; Ting Han; Ren Liu; Qiang Xia; Tian Xu; Yan Wang; Shuang Cai; Shui-Lin Luo; Yi Shao; Rui Wu
Journal:  Front Med (Lausanne)       Date:  2021-12-02

Review 4.  Towards standardizing retinal optical coherence tomography angiography: a review.

Authors:  Danuta M Sampson; Adam M Dubis; Fred K Chen; Robert J Zawadzki; David D Sampson
Journal:  Light Sci Appl       Date:  2022-03-18       Impact factor: 17.782

5.  Differentiating features of OCT angiography in diabetic macular edema.

Authors:  Reza Mirshahi; Hamid Riazi-Esfahani; Elias Khalili Pour; Kaveh Fadakar; Parsa Yarmohamadi; Sayyed Amirpooya Alemzadeh; Samira Chaibakhsh; Khalil Ghasemi Falavarjani
Journal:  Sci Rep       Date:  2021-12-03       Impact factor: 4.379

Review 6.  Machine learning in optical coherence tomography angiography.

Authors:  David Le; Taeyoon Son; Xincheng Yao
Journal:  Exp Biol Med (Maywood)       Date:  2021-07-19
  6 in total

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