Literature DB >> 33441598

Incorporating human mobility data improves forecasts of Dengue fever in Thailand.

Mathew V Kiang1, Mauricio Santillana2,3, Jarvis T Chen4, Jukka-Pekka Onnela5, Nancy Krieger4, Kenth Engø-Monsen6, Nattwut Ekapirat7, Darin Areechokchai8, Preecha Prempree8, Richard J Maude7,9,10, Caroline O Buckee11,12.   

Abstract

Over 390 million people worldwide are infected with dengue fever each year. In the absence of an effective vaccine for general use, national control programs must rely on hospital readiness and targeted vector control to prepare for epidemics, so accurate forecasting remains an important goal. Many dengue forecasting approaches have used environmental data linked to mosquito ecology to predict when epidemics will occur, but these have had mixed results. Conversely, human mobility, an important driver in the spatial spread of infection, is often ignored. Here we compare time-series forecasts of dengue fever in Thailand, integrating epidemiological data with mobility models generated from mobile phone data. We show that geographically-distant provinces strongly connected by human travel have more highly correlated dengue incidence than weakly connected provinces of the same distance, and that incorporating mobility data improves traditional time-series forecasting approaches. Notably, no single model or class of model always outperformed others. We propose an adaptive, mosaic forecasting approach for early warning systems.

Entities:  

Year:  2021        PMID: 33441598      PMCID: PMC7806770          DOI: 10.1038/s41598-020-79438-0

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  43 in total

1.  Spatiotemporal dynamics of epidemics: synchrony in metapopulation models.

Authors:  Alun L Lloyd; Vincent A A Jansen
Journal:  Math Biosci       Date:  2004 Mar-Apr       Impact factor: 2.144

2.  Revealing the microscale spatial signature of dengue transmission and immunity in an urban population.

Authors:  Henrik Salje; Justin Lessler; Timothy P Endy; Frank C Curriero; Robert V Gibbons; Ananda Nisalak; Suchitra Nimmannitya; Siripen Kalayanarooj; Richard G Jarman; Stephen J Thomas; Donald S Burke; Derek A T Cummings
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

3.  Dengue vaccine: WHO position paper, September 2018 - Recommendations.

Authors: 
Journal:  Vaccine       Date:  2018-11-10       Impact factor: 3.641

4.  Infectious disease prediction with kernel conditional density estimation.

Authors:  Evan L Ray; Krzysztof Sakrejda; Stephen A Lauer; Michael A Johansson; Nicholas G Reich
Journal:  Stat Med       Date:  2017-09-14       Impact factor: 2.373

Review 5.  Epidemiological trends of dengue disease in Thailand (2000-2011): a systematic literature review.

Authors:  Kriengsak Limkittikul; Jeremy Brett; Maïna L'Azou
Journal:  PLoS Negl Trop Dis       Date:  2014-11-06

6.  The 2012 Madeira dengue outbreak: epidemiological determinants and future epidemic potential.

Authors:  José Lourenço; Mario Recker
Journal:  PLoS Negl Trop Dis       Date:  2014-08-21

7.  Inferring the Spatio-temporal Patterns of Dengue Transmission from Surveillance Data in Guangzhou, China.

Authors:  Guanghu Zhu; Jiming Liu; Qi Tan; Benyun Shi
Journal:  PLoS Negl Trop Dis       Date:  2016-04-22

8.  Prospective forecasts of annual dengue hemorrhagic fever incidence in Thailand, 2010-2014.

Authors:  Stephen A Lauer; Krzysztof Sakrejda; Evan L Ray; Lindsay T Keegan; Qifang Bi; Paphanij Suangtho; Soawapak Hinjoy; Sopon Iamsirithaworn; Suthanun Suthachana; Yongjua Laosiritaworn; Derek A T Cummings; Justin Lessler; Nicholas G Reich
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-20       Impact factor: 11.205

9.  Make Data Sharing Routine to Prepare for Public Health Emergencies.

Authors:  Jean-Paul Chretien; Caitlin M Rivers; Michael A Johansson
Journal:  PLoS Med       Date:  2016-08-16       Impact factor: 11.069

10.  Dengue forecasting in São Paulo city with generalized additive models, artificial neural networks and seasonal autoregressive integrated moving average models.

Authors:  Oswaldo Santos Baquero; Lidia Maria Reis Santana; Francisco Chiaravalloti-Neto
Journal:  PLoS One       Date:  2018-04-02       Impact factor: 3.240

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  5 in total

1.  Multiple chikungunya virus introductions in Lao PDR from 2014 to 2020.

Authors:  Elodie Calvez; Phaithong Bounmany; Somphavanh Somlor; Thonglakhone Xaybounsou; Souksakhone Viengphouthong; Sitsana Keosenhom; Paul T Brey; Vincent Lacoste; Marc Grandadam
Journal:  PLoS One       Date:  2022-07-15       Impact factor: 3.752

2.  Using heterogeneous data to identify signatures of dengue outbreaks at fine spatio-temporal scales across Brazil.

Authors:  Lauren A Castro; Nicholas Generous; Wei Luo; Ana Pastore Y Piontti; Kaitlyn Martinez; Marcelo F C Gomes; Dave Osthus; Geoffrey Fairchild; Amanda Ziemann; Alessandro Vespignani; Mauricio Santillana; Carrie A Manore; Sara Y Del Valle
Journal:  PLoS Negl Trop Dis       Date:  2021-05-21

3.  Reconstructing unseen transmission events to infer dengue dynamics from viral sequences.

Authors:  Caroline Buckee; Simon Cauchemez; Derek A T Cummings; Henrik Salje; Amy Wesolowski; Tyler S Brown; Mathew V Kiang; Irina Maljkovic Berry; Noemie Lefrancq; Stefan Fernandez; Richard G Jarman; Kriangsak Ruchusatsawat; Sopon Iamsirithaworn; Warunee P Vandepitte; Piyarat Suntarattiwong; Jonathan M Read; Chonticha Klungthong; Butsaya Thaisomboonsuk; Kenth Engø-Monsen
Journal:  Nat Commun       Date:  2021-03-22       Impact factor: 17.694

4.  Distinguishing gene flow between malaria parasite populations.

Authors:  Tyler S Brown; Olufunmilayo Arogbokun; Caroline O Buckee; Hsiao-Han Chang
Journal:  PLoS Genet       Date:  2021-12-20       Impact factor: 5.917

5.  Improving Dengue Forecasts by Using Geospatial Big Data Analysis in Google Earth Engine and the Historical Dengue Information-Aided Long Short Term Memory Modeling.

Authors:  Zhichao Li; Helen Gurgel; Lei Xu; Linsheng Yang; Jinwei Dong
Journal:  Biology (Basel)       Date:  2022-01-21
  5 in total

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