Literature DB >> 33441590

An absorbance method for analysis of enzymatic degradation kinetics of poly(ethylene terephthalate) films.

En Ze Linda Zhong-Johnson1, Christopher A Voigt2, Anthony J Sinskey3.   

Abstract

Increased interest in poly(ethylene terephthalate) (PET)-degrading enzymes (PETases) have generated efforts to find mutants with improved catalytic activity and thermostability. Here, we present a simple and fast method to determine relative enzyme kinetics through bulk absorbance measurements of released products over time. A thermostable variant of PETase from Ideonella sakaiensis was engineered (R280A S121E D186H N233C S282C) with a denaturation temperature of 69.4 ± 0.3 °C. This was used to assess the method's ability to determine relative enzyme kinetics across variants and reveal structure-function relationships. Measurements at 24 and 72 h at 400 nM of enzyme suggest that the mutations improved catalytic rates 5- to 7-fold. On the contrary, kinetic analyses of the thermostable variant and wild-type reveal different reaction trajectories despite similar maximum catalytic rates, resulting in higher product accumulation from the thermostable variant over time. The results of the assay support the necessity for kinetic measurements to determine relationships between sequence and function for IsPETase and other PET hydrolases.

Entities:  

Year:  2021        PMID: 33441590      PMCID: PMC7806724          DOI: 10.1038/s41598-020-79031-5

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  26 in total

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Authors:  Zhuoliang Ye; R Eric Berson
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Review 2.  Microplastics in the marine environment.

Authors:  Anthony L Andrady
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3.  Marine pollution. Plastic waste inputs from land into the ocean.

Authors:  Jenna R Jambeck; Roland Geyer; Chris Wilcox; Theodore R Siegler; Miriam Perryman; Anthony Andrady; Ramani Narayan; Kara Lavender Law
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4.  Fast Turbidimetric Assay for Analyzing the Enzymatic Hydrolysis of Polyethylene Terephthalate Model Substrates.

Authors:  Matheus R Belisário-Ferrari; Ren Wei; Tobias Schneider; Annett Honak; Wolfgang Zimmermann
Journal:  Biotechnol J       Date:  2018-12-21       Impact factor: 4.677

5.  A high-throughput assay for enzymatic polyester hydrolysis activity by fluorimetric detection.

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Journal:  Biotechnol J       Date:  2012-06-27       Impact factor: 4.677

6.  Surface engineering of a cutinase from Thermobifida cellulosilytica for improved polyester hydrolysis.

Authors:  Enrique Herrero Acero; Doris Ribitsch; Anita Dellacher; Sabine Zitzenbacher; Annemarie Marold; Georg Steinkellner; Karl Gruber; Helmut Schwab; Georg M Guebitz
Journal:  Biotechnol Bioeng       Date:  2013-04-29       Impact factor: 4.530

7.  An engineered PET depolymerase to break down and recycle plastic bottles.

Authors:  V Tournier; C M Topham; A Gilles; B David; C Folgoas; E Moya-Leclair; E Kamionka; M-L Desrousseaux; H Texier; S Gavalda; M Cot; E Guémard; M Dalibey; J Nomme; G Cioci; S Barbe; M Chateau; I André; S Duquesne; A Marty
Journal:  Nature       Date:  2020-04-08       Impact factor: 49.962

8.  Engineered bacterial polyester hydrolases efficiently degrade polyethylene terephthalate due to relieved product inhibition.

Authors:  Ren Wei; Thorsten Oeser; Juliane Schmidt; René Meier; Markus Barth; Johannes Then; Wolfgang Zimmermann
Journal:  Biotechnol Bioeng       Date:  2016-02-04       Impact factor: 4.530

Review 9.  Microbial enzymes for the recycling of recalcitrant petroleum-based plastics: how far are we?

Authors:  Ren Wei; Wolfgang Zimmermann
Journal:  Microb Biotechnol       Date:  2017-03-28       Impact factor: 5.813

10.  Structural insight into molecular mechanism of poly(ethylene terephthalate) degradation.

Authors:  Seongjoon Joo; In Jin Cho; Hogyun Seo; Hyeoncheol Francis Son; Hye-Young Sagong; Tae Joo Shin; So Young Choi; Sang Yup Lee; Kyung-Jin Kim
Journal:  Nat Commun       Date:  2018-01-26       Impact factor: 14.919

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  5 in total

Review 1.  Mechanism-Based Design of Efficient PET Hydrolases.

Authors:  Ren Wei; Gerlis von Haugwitz; Lara Pfaff; Jan Mican; Christoffel P S Badenhorst; Weidong Liu; Gert Weber; Harry P Austin; David Bednar; Jiri Damborsky; Uwe T Bornscheuer
Journal:  ACS Catal       Date:  2022-02-28       Impact factor: 13.084

2.  Engineering and evaluation of thermostable IsPETase variants for PET degradation.

Authors:  Stefan Brott; Lara Pfaff; Josephine Schuricht; Jan-Niklas Schwarz; Dominique Böttcher; Christoffel P S Badenhorst; Ren Wei; Uwe T Bornscheuer
Journal:  Eng Life Sci       Date:  2021-11-29       Impact factor: 2.678

Review 3.  Toward Microbial Recycling and Upcycling of Plastics: Prospects and Challenges.

Authors:  Jo-Anne Verschoor; Hadiastri Kusumawardhani; Arthur F J Ram; Johannes H de Winde
Journal:  Front Microbiol       Date:  2022-03-23       Impact factor: 5.640

4.  Multiple Substrate Binding Mode-Guided Engineering of a Thermophilic PET Hydrolase.

Authors:  Lara Pfaff; Jian Gao; Zhishuai Li; Anna Jäckering; Gert Weber; Jan Mican; Yinping Chen; Weiliang Dong; Xu Han; Christian G Feiler; Yu-Fei Ao; Christoffel P S Badenhorst; David Bednar; Gottfried J Palm; Michael Lammers; Jiri Damborsky; Birgit Strodel; Weidong Liu; Uwe T Bornscheuer; Ren Wei
Journal:  ACS Catal       Date:  2022-07-27       Impact factor: 13.700

5.  Standardized method for controlled modification of poly (ethylene terephthalate) (PET) crystallinity for assaying PET degrading enzymes.

Authors:  Thore Bach Thomsen; Cameron J Hunt; Anne S Meyer
Journal:  MethodsX       Date:  2022-08-09
  5 in total

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