Literature DB >> 33439152

Using yeast surface display to engineer a soluble and crystallizable construct of hematopoietic progenitor kinase 1 (HPK1).

Wai L Lau1, Bradley Pearce2, Heather Malakian1, Iyoncy Rodrigo3, Dianlin Xie3, Mian Gao3, Frank Marsilio3, Chiehying Chang4, Max Ruzanov4, Jodi K Muckelbauer4, John A Newitt3, Daša Lipovšek1, Steven Sheriff4.   

Abstract

Hematopoietic progenitor kinase 1 (HPK1) is an intracellular kinase that plays an important role in modulating tumor immune response and thus is an attractive target for drug discovery. Crystallization of the wild-type HPK1 kinase domain has been hampered by poor expression in recombinant systems and poor solubility. In this study, yeast surface display was applied to a library of HPK1 kinase-domain variants in order to select variants with an improved expression level and solubility. The HPK1 variant with the most improved properties contained two mutations, crystallized readily in complex with several small-molecule inhibitors and provided valuable insight to guide structure-based drug design. This work exemplifies the benefit of yeast surface display towards engineering crystallizable proteins and thus enabling structure-based drug discovery.

Entities:  

Keywords:  HPK1; crystallizability; hematopoietic progenitor kinase 1; homology modeling; yeast surface display

Mesh:

Substances:

Year:  2020        PMID: 33439152      PMCID: PMC7805552          DOI: 10.1107/S2053230X20016015

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  33 in total

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Authors:  Lorenzo Benatuil; Jennifer M Perez; Jonathan Belk; Chung-Ming Hsieh
Journal:  Protein Eng Des Sel       Date:  2010-02-03       Impact factor: 1.650

2.  Directed evolution of Her2/neu-binding IgG1-Fc for improved stability and resistance to aggregation by using yeast surface display.

Authors:  Michael W Traxlmayr; Elisabeth Lobner; Bernhard Antes; Manuela Kainer; Susanne Wiederkum; Christoph Hasenhindl; Gerhard Stadlmayr; Florian Rüker; Max Woisetschläger; Kevin Moulder; Christian Obinger
Journal:  Protein Eng Des Sel       Date:  2012-12-23       Impact factor: 1.650

3.  Yeast surface display for screening combinatorial polypeptide libraries.

Authors:  E T Boder; K D Wittrup
Journal:  Nat Biotechnol       Date:  1997-06       Impact factor: 54.908

4.  Shape complementarity at protein/protein interfaces.

Authors:  M C Lawrence; P M Colman
Journal:  J Mol Biol       Date:  1993-12-20       Impact factor: 5.469

5.  Hematopoietic progenitor kinase 1 associates physically and functionally with the adaptor proteins B cell linker protein and SLP-76 in lymphocytes.

Authors:  K Sauer; J Liou; S B Singh; D Yablonski; A Weiss; R M Perlmutter
Journal:  J Biol Chem       Date:  2001-08-03       Impact factor: 5.157

6.  Multiple conformational states of the HPK1 kinase domain in complex with sunitinib reveal the structural changes accompanying HPK1 trans-regulation.

Authors:  Eric Johnson; Michele McTigue; Rebecca A Gallego; Ted W Johnson; Sergei Timofeevski; Michael Maestre; Timothy S Fisher; Robert Kania; Sansana Sawasdikosol; Steven Burakoff; Ciarán N Cronin
Journal:  J Biol Chem       Date:  2019-04-24       Impact factor: 5.157

7.  Release of serine/threonine-phosphorylated adaptors from signaling microclusters down-regulates T cell activation.

Authors:  Rémi Lasserre; Céline Cuche; Ronnie Blecher-Gonen; Evgeny Libman; Elise Biquand; Anne Danckaert; Deborah Yablonski; Andrés Alcover; Vincenzo Di Bartolo
Journal:  J Cell Biol       Date:  2011-11-21       Impact factor: 10.539

8.  REAL-Select: full-length antibody display and library screening by surface capture on yeast cells.

Authors:  Laura Rhiel; Simon Krah; Ralf Günther; Stefan Becker; Harald Kolmar; Björn Hock
Journal:  PLoS One       Date:  2014-12-12       Impact factor: 3.240

9.  Adnectin-drug conjugates for Glypican-3-specific delivery of a cytotoxic payload to tumors.

Authors:  Daša Lipovšek; Irvith Carvajal; Alban J Allentoff; Anthony Barros; John Brailsford; Qiang Cong; Pete Cotter; Sanjeev Gangwar; Cris Hollander; Virginie Lafont; Wai Leung Lau; Wenying Li; Miguel Moreta; Steven O'Neil; Jason Pinckney; Michael J Smith; Julie Su; Christina Terragni; Michael A Wallace; Lifei Wang; Martin Wright; H Nicholas Marsh; James W Bryson
Journal:  Protein Eng Des Sel       Date:  2018-05-01       Impact factor: 1.650

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  2 in total

1.  Yeast Surface Display: New Opportunities for a Time-Tested Protein Engineering System.

Authors:  Maryam Raeeszadeh-Sarmazdeh; Eric T Boder
Journal:  Methods Mol Biol       Date:  2022

2.  Discovery of Orally Active Isofuranones as Potent, Selective Inhibitors of Hematopoetic Progenitor Kinase 1.

Authors:  Andrew P Degnan; Godwin K Kumi; Christopher W Allard; Erika V Araujo; Walter L Johnson; Kurt Zimmermann; Bradley C Pearce; Steven Sheriff; Alan Futran; Xin Li; Gregory A Locke; Dan You; John Morrison; Karen E Parrish; Caitlyn Stromko; Anwar Murtaza; Jinqi Liu; Benjamin M Johnson; Gregory D Vite; Mark D Wittman
Journal:  ACS Med Chem Lett       Date:  2021-02-19       Impact factor: 4.345

  2 in total

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