Literature DB >> 33437422

Effective number of white shark (Carcharodon carcharias, Linnaeus) breeders is stable over four successive years in the population adjacent to eastern Australia and New Zealand.

Danielle Davenport1, Paul Butcher2, Sara Andreotti3, Conrad Matthee3, Andrew Jones1, Jennifer Ovenden1.   

Abstract

Population size is a central parameter for conservation; however, monitoring abundance is often problematic for threatened marine species. Despite substantial investment in research, many marine species remain data-poor presenting barriers to the evaluation of conservation management outcomes and the modeling of future solutions. Such is the case for the white shark (Carcharodon carcharias), a highly mobile apex predator for whom recent and substantial population declines have been recorded in many globally distributed populations. Here, we estimate the effective number of breeders that successfully contribute offspring in one reproductive cycle (Nb) to provide a snapshot of recent reproductive effort in an east Australian-New Zealand population of white shark. Nb was estimated over four consecutive age cohorts (2010, 2011, 2012, and 2013) using two genetic estimators (linkage disequilibrium; LD and sibship assignment; SA) based on genetic data derived from two types of genetic markers (single nucleotide polymorphisms; SNPs and microsatellite loci). While estimates of Nb using different marker types produced comparable estimates, microsatellite loci were the least precise. The LD and SA estimates of Nb within cohorts using SNPs were comparable; for example, the 2013 age cohort Nb(SA) was 289 (95% CI 200-461) and Nb(LD) was 208.5 (95% CI 116.4-712.7). We show that over the time period studied, Nb was stable and ranged between 206.1 (SD ± 45.9) and 252.0 (SD ± 46.7) per year using a combined estimate of Nb(LD+SA) from SNP loci. In addition, a simulation approach showed that in this population the effective population size (Ne) per generation can be expected to be larger than Nb per reproductive cycle. This study demonstrates how breeding population size can be monitored over time to provide insight into the effectiveness of recovery and conservation measures for the white shark, where the methods described here may be applicable to other data-poor species of conservation concern.
© 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.

Entities:  

Keywords:  conservation; effective number of breeders; effective population size; monitoring; population genetics

Year:  2020        PMID: 33437422      PMCID: PMC7790646          DOI: 10.1002/ece3.7007

Source DB:  PubMed          Journal:  Ecol Evol        ISSN: 2045-7758            Impact factor:   2.912


  47 in total

Review 1.  Genetic monitoring as a promising tool for conservation and management.

Authors:  Michael K Schwartz; Gordon Luikart; Robin S Waples
Journal:  Trends Ecol Evol       Date:  2006-09-07       Impact factor: 17.712

2.  NeEstimator v2: re-implementation of software for the estimation of contemporary effective population size (Ne ) from genetic data.

Authors:  C Do; R S Waples; D Peel; G M Macbeth; B J Tillett; J R Ovenden
Journal:  Mol Ecol Resour       Date:  2013-08-31       Impact factor: 7.090

3.  Estimating contemporary effective population size on the basis of linkage disequilibrium in the face of migration.

Authors:  Robin S Waples; Phillip R England
Journal:  Genetics       Date:  2011-08-11       Impact factor: 4.562

4.  When are genetic methods useful for estimating contemporary abundance and detecting population trends?

Authors:  David A Tallmon; Dave Gregovich; Robin S Waples; C Scott Baker; Jennifer Jackson; Barbara L Taylor; Eric Archer; Karen K Martien; Fred W Allendorf; Michael K Schwartz
Journal:  Mol Ecol Resour       Date:  2010-02-12       Impact factor: 7.090

5.  Life-history correlates of extinction risk and recovery potential.

Authors:  Jeffrey A Hutchings; Ransom A Myers; Verónica B García; Luis O Lucifora; Anna Kuparinen
Journal:  Ecol Appl       Date:  2012-06       Impact factor: 4.657

6.  A checklist of attributes for effective monitoring of threatened species and threatened ecosystems.

Authors:  David Lindenmayer; John Woinarski; Sarah Legge; Darren Southwell; Tyrone Lavery; Natasha Robinson; Ben Scheele; Brendan Wintle
Journal:  J Environ Manage       Date:  2020-02-25       Impact factor: 6.789

7.  Estimation of contemporary effective population size and population declines using RAD sequence data.

Authors:  Schyler O Nunziata; David W Weisrock
Journal:  Heredity (Edinb)       Date:  2017-12-22       Impact factor: 3.821

8.  Discriminant analysis of principal components: a new method for the analysis of genetically structured populations.

Authors:  Thibaut Jombart; Sébastien Devillard; François Balloux
Journal:  BMC Genet       Date:  2010-10-15       Impact factor: 2.797

9.  Early detection of population declines: high power of genetic monitoring using effective population size estimators.

Authors:  Tiago Antao; Andrés Pérez-Figueroa; Gordon Luikart
Journal:  Evol Appl       Date:  2010-08-03       Impact factor: 5.183

10.  Extinction risk and conservation of the world's sharks and rays.

Authors:  Nicholas K Dulvy; Sarah L Fowler; John A Musick; Rachel D Cavanagh; Peter M Kyne; Lucy R Harrison; John K Carlson; Lindsay Nk Davidson; Sonja V Fordham; Malcolm P Francis; Caroline M Pollock; Colin A Simpfendorfer; George H Burgess; Kent E Carpenter; Leonard Jv Compagno; David A Ebert; Claudine Gibson; Michelle R Heupel; Suzanne R Livingstone; Jonnell C Sanciangco; John D Stevens; Sarah Valenti; William T White
Journal:  Elife       Date:  2014-01-21       Impact factor: 8.140

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