| Literature DB >> 33437178 |
Amira Ben Ahmed1, Sabrina Zidi1, Wassim Almawi2, Ezzeddine Ghazouani3, Amel Mezlini4, Besma Yacoubi Loueslati1, Mouna Stayoussef1.
Abstract
INTRODUCTION: We investigated the association between common variants in TGF-β1, IL-6 and the risk of ovarian cancer (OC) in Tunisian patients and control women. MATERIAL METHODS ANDEntities:
Keywords: IL-6; TGF-β1; Tunisian women; gene polymorphism; haplotypes; ovarian cancer
Year: 2020 PMID: 33437178 PMCID: PMC7790009 DOI: 10.5114/ceji.2020.101242
Source DB: PubMed Journal: Cent Eur J Immunol ISSN: 1426-3912 Impact factor: 2.085
Characteristics of the study participants
| Characteristics | Cases | Controls | ||
|---|---|---|---|---|
| Environmental characteristics | ||||
| Age (mean ±SD) | 51.08 ±14.04 | 51.73 ±14.21 | 0.584 | |
| ≥ 50 years, | 36 (50.70) | 39 (52.70) | 0.470 | |
| Post-menopausal, | 43 (60.60) | 47 (63.50) | 0.422 | |
| Clinical characteristics | ||||
| FIGO staging of cancer, | ||||
| Stage I | 10 (14.10) | N/A | ||
| Stage II | 25 (35.20) | N/A | ||
| Stage III | 30 (42.30) | N/A | ||
| Stage IV | 06 (08.50) | N/A | ||
| Histological type, | ||||
| Serious papillary | 49 (69.00) | N/A | ||
| Endometrioid | 14 (19.70) | N/A | ||
| Mixed/other | 07 (09.90) | N/A | ||
| Mucinous | 01 (01.40) | N/A | ||
FIGO – International Federation of Gynecology and Obstetrics, NA – not applicable, * Student’s t-test (continuous variables), Pearson χ2 test (categorical variables)
TGF-β1 and IL-6 SNPs allelic distribution in patients and controls
| SNPs | MAF | HWE | χ2 | OR (95% CI) | |||||
|---|---|---|---|---|---|---|---|---|---|
| rs number | Locationa | MA | Casesb | Controlsb | |||||
| TGF-β1 | |||||||||
| rs1800472 | 41341955 | T | 0.06 | 0.06 | 0.23 | 0.02 | 0.87 | 1.08 (0.40-2.89) | |
| rs1800470 | 41353016 | C | 0.37 | 0.33 | 0.06 | 0.56 | 0.45 | 1.20 (0.74-1.94) | |
| rs1800469 | 41354391 | T | 0.30 | 0.39 | 0.46 | 2.17 | 0.14 | 1.44 (0.88-2.34) | |
| IL-6 | |||||||||
| rs1880242 | 22719988 | T | 0.170 | 0.280 | 0.1195 | 4.862 | 0.0275 | 0.53 (0.29-0.97) | |
| rs2069827 | 22725837 | T | 0.035 | 0.027 | 1.0 | 0.161 | 0.6879 | 1.31 (0.30-5.96) | |
| rs1800797 | 22726602 | G | 0.150 | 0.160 | 0.1939 | 0.113 | 0.7372 | 0.90 (0.45-1.77) | |
| rs1800796 | 22726627 | C | 0.080 | 0.080 | 0.4262 | 0.013 | 0.9093 | 0.95 (0.38-2.44) | |
| rs1800795 | 22727026 | C | 0.130 | 0.160 | 0.1026 | 0.273 | 0.6013 | 0.84 (0.41-1.70) | |
| rs1474348 | 22728289 | C | 0.180 | 0.190 | 0.0027 | 0.084 | 0.7724 | 0.92 (0.48-1.73) | |
| rs1474347 | 22728505 | T | 0.170 | 0.180 | 0.0667 | 0.023 | 0.8807 | 0.95 (0.50-1.83) | |
| rs2069845 | 22730530 | A | 0.283 | 0.203 | 0.0554 | 2.491 | 0.1145 | 1.55 (0.87-2.77) | |
location on chromosome, bstudy subjects included 71 ovarian cancer cases and 74 control women, MA – minor allele, MAF – minor allele frequency, HWE – Hardy-Weinberg equilibrium, OR – odds ratio; nominal value of comparison; p > 0.05, no significant association, degree of freedom = 1
TGF-β1 genotype distribution in cases and controls
| SNP | Genotypes | Casesa | Controlsa | OR (95% CI) | |
|---|---|---|---|---|---|
| rs1800472 | C/C | 63 (88.70%) | 66 (89.20%) | 0.42 | 1.00 (ref.) |
| C/T | 08 (11.30%) | 07 (09.50%) | 1.34 (0.38-4.80) | ||
| T/T | 00 (00.00%) | 01 (01.40%) | 0.00 (0.00-ND) | ||
| [C/T+T/T] | 08 (11.30%) | 08 (10.80%) | 0.42 | 1.15 (0.33-3.95) | |
| rs1800470 | T/T | 33 (47.90%) | 37 (50.00%) | 0.54 | 1.00 (ref.) |
| T/C | 21 (29.60%) | 25 (33.60%) | 0.98 (0.39-2.45) | ||
| C/C | 16 (22.50%) | 12 (16.20%) | 1.69 (0.59-4.89) | ||
| [T/C + C/C] | 37 (52.10%) | 37 (50.00%) | 0.66 | 1.20 (0.53-2.73) | |
| rs1800469 | C/C | 40 (56.30%) | 26 (35.10%) | < 0.001 | 1.00 (ref.) |
| C/T | 19 (26.80%) | 39 (52.70%) | 0.24 (0.1-0.58) | ||
| T/T | 12 (16.90%) | 09 (12.20%) | 0.81 (0.25-2.65) | ||
| [C/T + T/T] | 31 (43.70%) | 48 (64.90%) | < 0.001 | 0.33 (0.15-0.74) |
Values in bold are statistically significant at the 5% level, a study subjects comprised 71 ovarian cancer patients and 74 control women, ND – not defined, OR – odds ratio; nominal value of comparison, p > 0.05, no significant association, degree of freedom = 1
IL-6 genotype distribution in cases and controls
| SNP | Genotypes | Casesa | Controlsa | OR (95% CI) | |
|---|---|---|---|---|---|
| rs1880242 | G/G | 50 (70.4%) | 41 (55.4%) | 0.053 | 1.00 (ref.) |
| G/T | 18 (25.4%) | 25 (33.8%) | 0.43 (0.18-1.05) | ||
| T/T | 03 (04.2%) | 08 (10.8%) | 0.23 (0.04-1.17) | ||
| [G/T+T/T] | 21 (29.6%) | 33 (44.6%) | 0.021 | 0.38 (0.17-0.88) | |
| rs2069827 | G/G | 66 (93.0%) | 70 (94.6%) | 0.690 | 1.00 (ref.) |
| G/T | 04 (05.4%) | 05 (07.0%) | 1.38 (0.28-6.78) | ||
| T/T | 0 | 0 | ND | ||
| [G/T+T/T] | – | – | ND | ||
| rs1800797 | A/A | 52 (73.2%) | 54 (73.0%) | 0.900 | 1.00 (ref.) |
| A/G | 17 (23.9%) | 16 (21.6%) | 1.10 (0.42-2.88) | ||
| G/G | 02 (02.8%) | 04 (05.4%) | 0.68 (0.10-4.80) | ||
| [A/G+G/G] | 19 (26.8%) | 20 (27.0%) | 0.980 | 1.01 (0.42-2.45) | |
| rs1800796 | G/G | 60 (84.5%) | 64 (86.5%) | 0.045 | 1.00 (ref.) |
| G/C | 11 (15.5%) | 08 (10.8%) | 0.620 | 1.65 (0.51-5.03) | |
| C/C | 0 | 02 (02.7%) | ND | ||
| [G/C+C/C] | 64 (86.5%) | 10 (13.5%) | 1.33 (0.42-4.06) | ||
| rs1800795 | G/G | 54 (76.1%) | 55 (74.3%) | 0.920 | 1.00 (ref.) |
| G/C | 15 (21.1%) | 15 (20.3%) | 0.98 (0.37-2.61) | ||
| C/C | 02 (02.8%) | 04 (05.4%) | 0.61 (0.09-4.70) | ||
| [G/C+C/C] | 19 (25.7%) | 17 (23.9%) | 0.840 | 0.91 (0.38-2.23) | |
| rs1474348 | G/G | 50 (70.4%) | 53 (71.6%) | 0.630 | 1.00 (ref.) |
| G/C | 17 (23.9%) | 14 (18.9%) | 1.40 (0.52-3.77) | ||
| C/C | 04 (05.6%) | 07 (09.5%) | 0.66 (0.16-2.80) | ||
| [G/C+C/C] | 21 (29.6%) | 21 (28.4%) | 0.80 | 1.12 (0.47-2.67) | |
| rs1474347 | G/G | 50 (70.4%) | 53 (71.6%) | 0.81 | 1.00 (ref.) |
| G/T | 18 (25.4%) | 16 (21.6%) | 1.23 (0.46-3.29) | ||
| T/T | 03 (04.2%) | 05 (06.8%) | 0.69 (0.13-3.79) | ||
| [G/T+T/T] | 21(29.6%) | 21 (28.4%) | 0.86 | 1.09 (0.44-2.67) | |
| rs2069845 | G/G | 38 (55.1%) | 49 (66.2%) | 0.23 | 1.00 (ref.) |
| G/A | 23 (33.3%) | 20 (27.0%) | 1.65 (0.65-4.17) | ||
| A/A | 08 (11.6%) | 05 (06.8%) | 2.89 (0.75-11.23) | ||
| [G/A+A/A] | 31 (44.9%) | 25 (33.8%) | 0.12 | 1.93 (0.83-4.45) |
Values in bold are statistically significant at the 5% level, a study subjects comprised 71 ovarian cancer patients and 74 control women, ND – not defined, OR – odds ratio; nominal value of comparison, p > 0.05, no significant association, degree of freedom = 1
Distribution of 3-locus TGF-β1 haplotypes in ovarian cancer (OC) cases and controls
| Haplotypea | Frequency | OC cases | Controls | Pc | aOR (95% CI) |
|---|---|---|---|---|---|
| CTC | 0.537 | 0.541 | 0.537 | – | 1.00 (ref.) |
| CCT | 0.220 | 0.248 | 0.205 | 0.64 | 0.87 (0.50-1.53) |
| CCC | 0.113 | 0.062 | 0.152 | 0.11 | 1.87 (0.86-4.04) |
| CTT | 0.069 | 0.086 | 0.048 | 0.26 | 0.56 (0.20-1.54) |
| TTT | 0.037 | 0.040 | 0.034 | 1.00 | 1.00 (0.31-3.24) |
| TCT | 0.017 | 0.009 | 0.014 | 0.60 | 0.61 (0.09-3.97) |
rs1800472/rs1800470/rs1800469 haplotypes, Pc – corrected p-value according to Bonferroni correction, aOR – adjusted OR controlled from age; bold characters indicate minor allele
Fig. 1Linkage disequilibrium (LD) plot and SNPs of TGF-β1. The plot was generated using Haploview program with D’ color scheme (D’ = 0, 0)
Fig. 2Linkage disequilibrium (LD) map of the six IL-6 SNPs genotyped using Haploview. The positions of tested SNPs are indicated above the Haploview output. The LD between specific pair of IL-6 SNPs is indicated by color scheme, which represents LD relationships, based on D’ values (normalized linkage disequilibrium measure or D) multiplied by 100. D’ is calculated as D divided by theoretical maximum for observed allele frequencies. Values approaching zero indicate absence of LD, and those approaching 100 indicate complete LD. The square-colored red represents varying degrees of LD < 1 and LOD (logarithm of odds) > 2 scores; darker shades indicating stronger LD
Distribution of 8-locus IL-6 haplotypes in OC cases and controls
| Haplotypea | Cases | Controls | χ2 | |
|---|---|---|---|---|
| GGAGGGGG | 0.581 | 0.641 | 1.113 | 0.2915 |
| TGGGCCTA | 0.063 | 0.135 | 4.129 | 0.0422 |
| GGAGGGGA | 0.102 | 0.034 | 5.338 | 0.0209 |
| TGACGGGG | 0.042 | 0.081 | 1.871 | 0.1714 |
| GGAGGCGG | 0.050 | 0.027 | 0.993 | 0.3191 |
| TGAGGGGG | 0.014 | 0.034 | 1.216 | 0.2701 |
| TTGGCCTA | 0.014 | 0.020 | 0.164 | 0.6858 |
| GGAGGGTA | 0.034 | 0.000 | 5.159 | 0.0231 |
| TGGGCGTA | 0.021 | 0.000 | 2.989 | 0.0838 |
rs1880242, rs2069827, rs1800797, rs1800796, rs1800795, rs1474348, rs1474347, and rs2069845 haplotypes frequency, Fisher’s exact test, p > 0.05 no significant association, degree of freedom = 1; boldface indicates statistically significant differences