Literature DB >> 33434215

Identification of biomarkers and construction of a microRNA‑mRNA regulatory network for clear cell renal cell carcinoma using integrated bioinformatics analysis.

Miaoru Han1, Haifeng Yan1, Kang Yang1, Boya Fan1, Panying Liu1, Hongtao Yang1.   

Abstract

With the recent research development, the importance of microRNAs (miRNAs) in renal clear cell carcinoma (CCRCC) has become widely known. The purpose of this study is to screen out the potential biomarkers of renal clear cell carcinoma (CCRCC) by microarray analysis. The miRNA chip (GSE16441) and mRNA chip (GSE66270) related to CCRCC were downloaded from the Gene Expression Omnibus (GEO) database. After data filtering and pretreating, R platform and a series of analysis tools (funrich3.1.3, string, Cytoscape_ 3.2.1, David, etc.) were used to analyze chip data and identify the specific and highly sensitive biomarkers. Finally, by constructing the miRNA -mRNA interaction network, it was determined that five miRNAs (hsa-mir-199a-5p, hsa-mir-199b-5p, hsa-mir-532-3p and hsa-mir-429) and two key genes (ETS1 and hapln1) are significantly related to the overall survival rate of patients.

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Year:  2021        PMID: 33434215      PMCID: PMC7802940          DOI: 10.1371/journal.pone.0244394

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  41 in total

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Review 4.  The biology of the Ets1 proto-oncogene.

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Journal:  Mol Cancer       Date:  2003-08-20       Impact factor: 27.401

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10.  De novo HAPLN1 expression hallmarks Wnt-induced stem cell and fibrogenic networks leading to aggressive human hepatocellular carcinomas.

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  4 in total

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2.  Microarray analysis of potential biomarkers of brachial plexus avulsion caused neuropathic pain in male rat.

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3.  Identification of PLAUR-related ceRNA and immune prognostic signature for kidney renal clear cell carcinoma.

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4.  MiR-532-3p suppresses cell viability, migration and invasion of clear cell renal cell carcinoma through targeting TROAP.

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Journal:  Cell Cycle       Date:  2021-07-21       Impact factor: 5.173

  4 in total

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