Literature DB >> 33431654

Molecular structure of a prevalent amyloid-β fibril polymorph from Alzheimer's disease brain tissue.

Ujjayini Ghosh1, Kent R Thurber1, Wai-Ming Yau1, Robert Tycko2.   

Abstract

Amyloid-β (Aβ) fibrils exhibit self-propagating, molecular-level polymorphisms that may contribute to variations in clinical and pathological characteristics of Alzheimer's disease (AD). We report the molecular structure of a specific fibril polymorph, formed by 40-residue Aβ peptides (Aβ40), that is derived from cortical tissue of an AD patient by seeded fibril growth. The structure is determined from cryogenic electron microscopy (cryoEM) images, supplemented by mass-per-length (MPL) measurements and solid-state NMR (ssNMR) data. Previous ssNMR studies with multiple AD patients had identified this polymorph as the most prevalent brain-derived Aβ40 fibril polymorph from typical AD patients. The structure, which has 2.8-Å resolution according to standard criteria, differs qualitatively from all previously described Aβ fibril structures, both in its molecular conformations and its organization of cross-β subunits. Unique features include twofold screw symmetry about the fibril growth axis, despite an MPL value that indicates three Aβ40 molecules per 4.8-Å β-sheet spacing, a four-layered architecture, and fully extended conformations for molecules in the central two cross-β layers. The cryoEM density, ssNMR data, and MPL data are consistent with β-hairpin conformations for molecules in the outer cross-β layers. Knowledge of this brain-derived fibril structure may contribute to the development of structure-specific amyloid imaging agents and aggregation inhibitors with greater diagnostic and therapeutic utility.

Entities:  

Keywords:  Alzheimer’s disease; amyloid structure; cryo-electron microscopy; solid-state NMR

Mesh:

Substances:

Year:  2021        PMID: 33431654      PMCID: PMC7848700          DOI: 10.1073/pnas.2023089118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  52 in total

1.  Atomic Resolution Structure of Monomorphic Aβ42 Amyloid Fibrils.

Authors:  Michael T Colvin; Robert Silvers; Qing Zhe Ni; Thach V Can; Ivan Sergeyev; Melanie Rosay; Kevin J Donovan; Brian Michael; Joseph Wall; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2016-07-14       Impact factor: 15.419

2.  Solid-State-NMR-Structure-Based Inhibitor Design to Achieve Selective Inhibition of the Parallel-in-Register β-Sheet versus Antiparallel Iowa Mutant β-Amyloid Fibrils.

Authors:  Qinghui Cheng; Wei Qiang
Journal:  J Phys Chem B       Date:  2017-05-30       Impact factor: 2.991

3.  Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains.

Authors:  Dylan T Murray; Masato Kato; Yi Lin; Kent R Thurber; Ivan Hung; Steven L McKnight; Robert Tycko
Journal:  Cell       Date:  2017-09-21       Impact factor: 41.582

4.  Atomic-resolution structure of a disease-relevant Aβ(1-42) amyloid fibril.

Authors:  Marielle Aulikki Wälti; Francesco Ravotti; Hiromi Arai; Charles G Glabe; Joseph S Wall; Anja Böckmann; Peter Güntert; Beat H Meier; Roland Riek
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-28       Impact factor: 11.205

5.  Stabilization of a beta-hairpin in monomeric Alzheimer's amyloid-beta peptide inhibits amyloid formation.

Authors:  Wolfgang Hoyer; Caroline Grönwall; Andreas Jonsson; Stefan Ståhl; Torleif Härd
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-28       Impact factor: 11.205

6.  Molecular structural basis for polymorphism in Alzheimer's beta-amyloid fibrils.

Authors:  Anant K Paravastu; Richard D Leapman; Wai-Ming Yau; Robert Tycko
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-17       Impact factor: 11.205

7.  Aβ(1-42) fibril structure illuminates self-recognition and replication of amyloid in Alzheimer's disease.

Authors:  Yiling Xiao; Buyong Ma; Dan McElheny; Sudhakar Parthasarathy; Fei Long; Minako Hoshi; Ruth Nussinov; Yoshitaka Ishii
Journal:  Nat Struct Mol Biol       Date:  2015-05-04       Impact factor: 15.369

8.  Structural heterogeneity and intersubject variability of Aβ in familial and sporadic Alzheimer's disease.

Authors:  Carlo Condello; Thomas Lemmin; Jan Stöhr; Mimi Nick; Yibing Wu; Alison M Maxwell; Joel C Watts; Christoffer D Caro; Abby Oehler; C Dirk Keene; Thomas D Bird; Sjoerd G van Duinen; Lars Lannfelt; Martin Ingelsson; Caroline Graff; Kurt Giles; William F DeGrado; Stanley B Prusiner
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-08       Impact factor: 11.205

9.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

10.  Proliferation of amyloid-β42 aggregates occurs through a secondary nucleation mechanism.

Authors:  Samuel I A Cohen; Sara Linse; Leila M Luheshi; Erik Hellstrand; Duncan A White; Luke Rajah; Daniel E Otzen; Michele Vendruscolo; Christopher M Dobson; Tuomas P J Knowles
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-23       Impact factor: 11.205

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  27 in total

1.  Constraints on the Structure of Fibrils Formed by a Racemic Mixture of Amyloid-β Peptides from Solid-State NMR, Electron Microscopy, and Theory.

Authors:  Jevgenij A Raskatov; Alejandro R Foley; John M Louis; Wai-Ming Yau; Robert Tycko
Journal:  J Am Chem Soc       Date:  2021-08-10       Impact factor: 15.419

Review 2.  Structural biology of cell surface receptors implicated in Alzheimer's disease.

Authors:  Stefan J Hermans; Tracy L Nero; Craig J Morton; Jonathan H Gooi; Gabriela A N Crespi; Nancy C Hancock; Chen Gao; Kenta Ishii; Jasmina Markulić; Michael W Parker
Journal:  Biophys Rev       Date:  2021-11-18

Review 3.  Interpretable artificial intelligence and exascale molecular dynamics simulations to reveal kinetics: Applications to Alzheimer's disease.

Authors:  William Martin; Gloria Sheynkman; Felice C Lightstone; Ruth Nussinov; Feixiong Cheng
Journal:  Curr Opin Struct Biol       Date:  2021-10-07       Impact factor: 6.809

Review 4.  Conformational strains of pathogenic amyloid proteins in neurodegenerative diseases.

Authors:  Dan Li; Cong Liu
Journal:  Nat Rev Neurosci       Date:  2022-05-30       Impact factor: 38.755

Review 5.  General Principles Underpinning Amyloid Structure.

Authors:  Alexander I P Taylor; Rosemary A Staniforth
Journal:  Front Neurosci       Date:  2022-06-02       Impact factor: 5.152

Review 6.  Exploring amyloid oligomers with peptide model systems.

Authors:  Tuan D Samdin; Adam G Kreutzer; James S Nowick
Journal:  Curr Opin Chem Biol       Date:  2021-07-03       Impact factor: 8.972

7.  Automated picking of amyloid fibrils from cryo-EM images for helical reconstruction with RELION.

Authors:  Kent R Thurber; Yi Yin; Robert Tycko
Journal:  J Struct Biol       Date:  2021-04-06       Impact factor: 3.234

Review 8.  From structure to application: Progress and opportunities in peptide materials development.

Authors:  Tania L Lopez-Silva; Joel P Schneider
Journal:  Curr Opin Chem Biol       Date:  2021-07-29       Impact factor: 8.972

9.  QnAs with Robert Tycko.

Authors:  Farooq Ahmed
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-26       Impact factor: 12.779

10.  Polyphenol-solubility alters amyloid fibril formation of α-synuclein.

Authors:  Masatomo So; Yuto Kimura; Keiichi Yamaguchi; Toshihiko Sugiki; Toshimichi Fujiwara; Cesar Aguirre; Kensuke Ikenaka; Hideki Mochizuki; Yasushi Kawata; Yuji Goto
Journal:  Protein Sci       Date:  2021-06-02       Impact factor: 6.993

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