Literature DB >> 33428142

TMEM158 May Serve as a Diagnostic Biomarker for Anaplastic Thyroid Carcinoma: An Integrated Bioinformatic Analysis.

Han-Ning Li1, Ya-Ying Du1, Tao Xu1, Rui Zhang1, Ge Wang1, Zheng-Tao Lv2, Xing-Rui Li3.   

Abstract

Anaplastic thyroid carcinoma (ATC) is a rare but extremely lethal malignancy. However, little is known about the pathogenesis of ATC. Given its high mortality, it is critical to improve our understanding of ATC pathogenesis and to find new diagnostic biomarkers. In the present study, two gene microarray profiles (GSE53072 and GSE65144), which included 17 ATC and 17 adjacent non-tumorous tissues, were obtained. Bioinformatic analyses were then performed. Immunohistochemistry (IHC) and receiver operating characteristic (ROC) curves were then used to detect transmembrane protein 158 (TMEM158) expression and to assess diagnostic sensitivity. A total of 372 differentially expressed genes (DEGs) were identified. Through protein-protein interaction (PPI) analysis, we identified a significant module with 37 upregulated genes. Most of the genes in this module were related to cell-cycle processes. After co-expression analysis, 132 hub genes were selected for further study. Nine genes were identified as both DEGs and genes of interest in the weighted gene co-expression network analysis (WGCNA). IHC and ROC curves confirmed that TMEM158 was overexpressed in ATC tissue as compared with other types of thyroid cancer and normal tissue samples. We identified 8 KEGG pathways that were associated with high expression of TMEM158, including aminoacyl-tRNA biosynthesis and DNA replication. Our results suggest that TMEM158 may be a potential oncogene and serve as a diagnostic indicator for ATC.

Entities:  

Keywords:  anaplastic thyroid carcinoma; bioinformatics; gene set enrichment analysis; transmembrane protein 158; weighted gene co-expression network analysis

Year:  2021        PMID: 33428142     DOI: 10.1007/s11596-020-2296-8

Source DB:  PubMed          Journal:  Curr Med Sci        ISSN: 2523-899X


  56 in total

1.  Trends in Thyroid Cancer Incidence and Mortality in the United States, 1974-2013.

Authors:  Hyeyeun Lim; Susan S Devesa; Julie A Sosa; David Check; Cari M Kitahara
Journal:  JAMA       Date:  2017-04-04       Impact factor: 56.272

2.  Anaplastic carcinoma of the thyroid gland: treatment and outcome over 13 years at one institution.

Authors:  Ivan Segerhammar; Catharina Larsson; Inga-Lena Nilsson; Martin Bäckdahl; Anders Höög; Göran Wallin; Theodoros Foukakis; Jan Zedenius
Journal:  J Surg Oncol       Date:  2012-06-04       Impact factor: 3.454

3.  Mining Prognostic Significance of MEG3 in Human Breast Cancer Using Bioinformatics Analysis.

Authors:  Xiangrong Cui; Qin Yi; Xuan Jing; Yue Huang; Jie Tian; Chunlan Long; Zhongping Xiang; Jianping Liu; Chunmin Zhang; Bin Tan; Yasha Li; Jing Zhu
Journal:  Cell Physiol Biochem       Date:  2018-10-02

4.  Anaplastic thyroid carcinoma: a 25-year single-institution experience.

Authors:  A Mohebati; M Dilorenzo; F Palmer; S G Patel; D Pfister; N Lee; R M Tuttle; A R Shaha; J P Shah; I Ganly
Journal:  Ann Surg Oncol       Date:  2014-02-20       Impact factor: 5.344

5.  American Thyroid Association guidelines for management of patients with anaplastic thyroid cancer.

Authors:  Robert C Smallridge; Kenneth B Ain; Sylvia L Asa; Keith C Bible; James D Brierley; Kenneth D Burman; Electron Kebebew; Nancy Y Lee; Yuri E Nikiforov; M Sara Rosenthal; Manisha H Shah; Ashok R Shaha; R Michael Tuttle
Journal:  Thyroid       Date:  2012-11       Impact factor: 6.568

6.  Bioinformatics analysis of key genes and latent pathway interactions based on the anaplastic thyroid carcinoma gene expression profile.

Authors:  Yun Huang; Yiming Tao; Xinying Li; Shi Chang; Bo Jiang; Feng Li; Zhi-Ming Wang
Journal:  Oncol Lett       Date:  2016-11-30       Impact factor: 2.967

7.  Identification of key candidate genes and small molecule drugs in cervical cancer by bioinformatics strategy.

Authors:  Xin Tang; Yicong Xu; Lin Lu; Yang Jiao; Jianjun Liu; Linlin Wang; Hongbo Zhao
Journal:  Cancer Manag Res       Date:  2018-09-13       Impact factor: 3.989

8.  Identification of Key Pathways and Genes in Anaplastic Thyroid Carcinoma via Integrated Bioinformatics Analysis.

Authors:  Shengqing Hu; Yunfei Liao; Lulu Chen
Journal:  Med Sci Monit       Date:  2018-09-14

9.  WGCNA: an R package for weighted correlation network analysis.

Authors:  Peter Langfelder; Steve Horvath
Journal:  BMC Bioinformatics       Date:  2008-12-29       Impact factor: 3.169

Review 10.  Update on anaplastic thyroid carcinoma: morphological, molecular, and genetic features of the most aggressive thyroid cancer.

Authors:  Moira Ragazzi; Alessia Ciarrocchi; Valentina Sancisi; Greta Gandolfi; Alessandra Bisagni; Simonetta Piana
Journal:  Int J Endocrinol       Date:  2014-08-21       Impact factor: 3.257

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