Literature DB >> 33427903

Water and Life: The Medium is the Message.

Moran Frenkel-Pinter1,2,3, Vahab Rajaei1,2,3, Jennifer B Glass1,4, Nicholas V Hud1,2,3, Loren Dean Williams5,6,7.   

Abstract

Water, the most abundant compound on the surface of the Earth and probably in the universe, is the medium of biology, but is much more than that. Water is the most frequent actor in the chemistry of metabolism. Our quantitation here reveals that water accounts for 99.4% of metabolites in Escherichia coli by molar concentration. Between a third and a half of known biochemical reactions involve consumption or production of water. We calculated the chemical flux of water and observed that in the life of a cell, a given water molecule frequently and repeatedly serves as a reaction substrate, intermediate, cofactor, and product. Our results show that as an E. coli cell replicates in the presence of molecular oxygen, an average in vivo water molecule is chemically transformed or is mechanistically involved in catalysis ~ 3.7 times. We conclude that, for biological water, there is no distinction between medium and chemical participant. Chemical transformations of water provide a basis for understanding not only extant biochemistry, but the origins of life. Because the chemistry of water dominates metabolism and also drives biological synthesis and degradation, it seems likely that metabolism co-evolved with biopolymers, which helps to reconcile polymer-first versus metabolism-first theories for the origins of life.

Entities:  

Keywords:  Amino acid; Glycolysis; Metabolism; Metabolite; Oxidative phosphorylation; Translation

Year:  2021        PMID: 33427903      PMCID: PMC7884305          DOI: 10.1007/s00239-020-09978-6

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  39 in total

1.  Influences of solvent water on protein folding: free energies of solvation of cis and trans peptides are nearly identical.

Authors:  A Radzicka; L Pedersen; R Wolfenden
Journal:  Biochemistry       Date:  1988-06-14       Impact factor: 3.162

2.  A hierarchy of ATP-consuming processes in mammalian cells.

Authors:  F Buttgereit; M D Brand
Journal:  Biochem J       Date:  1995-11-15       Impact factor: 3.857

Review 3.  The respiratory chains of Escherichia coli.

Authors:  W J Ingledew; R K Poole
Journal:  Microbiol Rev       Date:  1984-09

4.  Water-inserted alpha-helical segments implicate reverse turns as folding intermediates.

Authors:  M Sundaralingam; Y C Sekharudu
Journal:  Science       Date:  1989-06-16       Impact factor: 47.728

5.  Changes in the proton potential and the cellular energetics of Escherichia coli during growth by aerobic and anaerobic respiration or by fermentation.

Authors:  Q H Tran; G Unden
Journal:  Eur J Biochem       Date:  1998-01-15

6.  Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli.

Authors:  Bryson D Bennett; Elizabeth H Kimball; Melissa Gao; Robin Osterhout; Stephen J Van Dien; Joshua D Rabinowitz
Journal:  Nat Chem Biol       Date:  2009-06-28       Impact factor: 15.040

7.  Proteome-pI: proteome isoelectric point database.

Authors:  Lukasz P Kozlowski
Journal:  Nucleic Acids Res       Date:  2016-10-26       Impact factor: 16.971

8.  Emergence of Function and Selection from Recursively Programmed Polymerisation Reactions in Mineral Environments.

Authors:  David Doran; Yousef M Abul-Haija; Leroy Cronin
Journal:  Angew Chem Int Ed Engl       Date:  2019-07-12       Impact factor: 15.336

9.  Structure of a Complete ATP Synthase Dimer Reveals the Molecular Basis of Inner Mitochondrial Membrane Morphology.

Authors:  Alexander Hahn; Kristian Parey; Maike Bublitz; Deryck J Mills; Volker Zickermann; Janet Vonck; Werner Kühlbrandt; Thomas Meier
Journal:  Mol Cell       Date:  2016-06-30       Impact factor: 17.970

10.  Comprehensive list of metabolites measured by DI-FTICR mass spectrometry in thyme plants with contrasting tolerance to drought.

Authors:  Parviz Moradi; Brian Ford-Lloyd; Jeremy Pritchard
Journal:  Data Brief       Date:  2017-04-29
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  4 in total

1.  An open source computational workflow for the discovery of autocatalytic networks in abiotic reactions.

Authors:  Aayush Arya; Jessica Ray; Siddhant Sharma; Romulo Cruz Simbron; Alejandro Lozano; Harrison B Smith; Jakob Lykke Andersen; Huan Chen; Markus Meringer; Henderson James Cleaves
Journal:  Chem Sci       Date:  2022-03-23       Impact factor: 9.969

2.  A Thermodynamic Model for Water Activity and Redox Potential in Evolution and Development.

Authors:  Jeffrey M Dick
Journal:  J Mol Evol       Date:  2022-03-13       Impact factor: 2.395

3.  Differential Oligomerization of Alpha versus Beta Amino Acids and Hydroxy Acids in Abiotic Proto-Peptide Synthesis Reactions.

Authors:  Moran Frenkel-Pinter; Kaitlin C Jacobson; Jonathan Eskew-Martin; Jay G Forsythe; Martha A Grover; Loren Dean Williams; Nicholas V Hud
Journal:  Life (Basel)       Date:  2022-02-10

4.  Resolving the History of Life on Earth by Seeking Life As We Know It on Mars.

Authors:  Christopher E Carr
Journal:  Astrobiology       Date:  2022-04-25       Impact factor: 4.045

  4 in total

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