Literature DB >> 33427607

Kibdelosporangium persicum sp. nov., a new member of the Actinomycetes from a hot desert in Iran.

Nasim Safaei1, Imen Nouioui2, Yvonne Mast3,2, Nestor Zaburannyi4,5, Manfred Rohde6, Peter Schumann2, Rolf Müller4,5, Joachim Wink1,4.   

Abstract

Isolate 4NS15T was isolated from a neglected arid habitat in Kerman, Iran. The strain showed 16S rRNA gene sequence similarity values of 98.9 % to the type strains of Kibdelosporangium aridum subsp. aridum, Kibdelosporangium phytohabitans and Kibdelosporangium philippinense and 98.6 % to the type strain K. aridum subsp. largum, respectively. Genome-based phylogenetic analysis revealed that isolate 4NS15T is closely related to Kibdelosporangium aridum subsp. aridum DSM 43828T. The digital DNA-DNA hybridization value between the genome sequences of 4NS15T and strain DSM 43828T is 29.8 %. Strain 4NS15T produces long chains of spores without a sporangium-like structure which can be distinguished from other Kibdelosporangium species. Isolate 4NS15T has a genome size of 10.35 Mbp with a G+C content of 68.1 mol%. Whole-cell hydrolysates of isolate 4NS15T are rich in meso-diaminopimelic acid and cell-wall sugars such as arabinose, galactose, glucose and ribose. Major fatty acids (>10 %) are C16 : 0, iso-C16 : 0 and iso-C15 : 0. The phospholipid profile contains diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylhydroxyethanolamine, aminolipid and glycoaminolipid. The predominant menaquinone is MK-9(H4). Based on its phenotypic and genotypic characteristics, isolate 4NS15T (NCCB 100701=CIP 111705=DSM 110728) merits recognition as representing a novel species of the genus Kibdelosporangium, for which the name Kibdelosporangium persicum sp. nov. is proposed.

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Keywords:  Kibdelosporangium persicum; desert habitat; novel species; polyphasic taxonomy; rare actinomycete

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Year:  2021        PMID: 33427607     DOI: 10.1099/ijsem.0.004625

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  2 in total

1.  Complete Genome Sequences of Two Novel Species from the Pseudonocardiaceae Family Isolated from the Persian Gulf.

Authors:  Nasim Safaei; Boyke Bunk; Cathrin Spröer; Joachim Wink; Yvonne Mast
Journal:  Microbiol Resour Announc       Date:  2021-12-16

2.  High-Quality Draft Genome Sequence of Kibdelosporangium philippinense, Generated by Hybrid Assembly of Short and Long Sequencing Reads.

Authors:  Eugenia A Fedorov; Medina Omeragic; Kristina F Shalygina; Ashlyn C Farwell; Kyle S MacLea
Journal:  Microbiol Resour Announc       Date:  2022-04-04
  2 in total

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