Literature DB >> 33425787

From Genes to Transcripts, a Tightly Regulated Journey in Plasmodium.

Thomas Hollin1, Karine G Le Roch1.   

Abstract

Over the past decade, we have witnessed significant progresses in understanding gene regulation in Apicomplexa including the human malaria parasite, Plasmodium falciparum. This parasite possesses the ability to convert in multiple stages in various hosts, cell types, and environments. Recent findings indicate that P. falciparum is talented at using efficient and complementary molecular mechanisms to ensure a tight control of gene expression at each stage of its life cycle. Here, we review the current understanding on the contribution of the epigenome, atypical transcription factors, and chromatin organization to regulate stage conversion in P. falciparum. The adjustment of these regulatory mechanisms occurring during the progression of the life cycle will be extensively discussed.
Copyright © 2020 Hollin and Le Roch.

Entities:  

Keywords:  AP2-G; Plasmodium; chromatin; epigenetics; gene regulation; sexual commitment

Mesh:

Substances:

Year:  2020        PMID: 33425787      PMCID: PMC7793691          DOI: 10.3389/fcimb.2020.618454

Source DB:  PubMed          Journal:  Front Cell Infect Microbiol        ISSN: 2235-2988            Impact factor:   5.293


  132 in total

1.  A positive-feedback-based bistable 'memory module' that governs a cell fate decision.

Authors:  Wen Xiong; James E Ferrell
Journal:  Nature       Date:  2003-11-27       Impact factor: 49.962

2.  Nucleosome landscape and control of transcription in the human malaria parasite.

Authors:  Nadia Ponts; Elena Y Harris; Jacques Prudhomme; Ivan Wick; Colleen Eckhardt-Ludka; Glenn R Hicks; Gary Hardiman; Stefano Lonardi; Karine G Le Roch
Journal:  Genome Res       Date:  2010-01-06       Impact factor: 9.043

3.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

4.  The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum.

Authors:  Zbynek Bozdech; Manuel Llinás; Brian Lee Pulliam; Edith D Wong; Jingchun Zhu; Joseph L DeRisi
Journal:  PLoS Biol       Date:  2003-08-18       Impact factor: 8.029

5.  Expression of the Plasmodium falciparum Clonally Variant clag3 Genes in Human Infections.

Authors:  Sofía Mira-Martínez; Evi van Schuppen; Alfred Amambua-Ngwa; Emmanuel Bottieau; Muna Affara; Marjan Van Esbroeck; Erika Vlieghe; Pieter Guetens; Núria Rovira-Graells; Gloria P Gómez-Pérez; Pedro L Alonso; Umberto D'Alessandro; Anna Rosanas-Urgell; Alfred Cortés
Journal:  J Infect Dis       Date:  2017-03-15       Impact factor: 5.226

6.  Recruitment of PfSET2 by RNA polymerase II to variant antigen encoding loci contributes to antigenic variation in P. falciparum.

Authors:  Uchechi E Ukaegbu; Sandeep P Kishore; Dacia L Kwiatkowski; Chethan Pandarinath; Noa Dahan-Pasternak; Ron Dzikowski; Kirk W Deitsch
Journal:  PLoS Pathog       Date:  2014-01-02       Impact factor: 6.823

7.  Genome-wide profiling of chromosome interactions in Plasmodium falciparum characterizes nuclear architecture and reconfigurations associated with antigenic variation.

Authors:  Jacob E Lemieux; Sue A Kyes; Thomas D Otto; Avi I Feller; Richard T Eastman; Robert A Pinches; Matthew Berriman; Xin-Zhuan Su; Chris I Newbold
Journal:  Mol Microbiol       Date:  2013-09-30       Impact factor: 3.501

Review 8.  Gametocyte Sex Ratio: The Key to Understanding Plasmodium falciparum Transmission?

Authors:  Fitsum G Tadesse; Lisette Meerstein-Kessel; Bronner P Gonçalves; Chris Drakeley; Lisa Ranford-Cartwright; Teun Bousema
Journal:  Trends Parasitol       Date:  2018-12-26

9.  Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features.

Authors:  David F Read; Kate Cook; Yang Y Lu; Karine G Le Roch; William Stafford Noble
Journal:  PLoS Comput Biol       Date:  2019-09-11       Impact factor: 4.475

10.  Dissecting the role of PfAP2-G in malaria gametocytogenesis.

Authors:  Gabrielle A Josling; Timothy J Russell; Jarrett Venezia; Lindsey Orchard; Riëtte van Biljon; Heather J Painter; Manuel Llinás
Journal:  Nat Commun       Date:  2020-03-20       Impact factor: 14.919

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  5 in total

1.  Genome-wide landscape of ApiAP2 transcription factors reveals a heterochromatin-associated regulatory network during Plasmodium falciparum blood-stage development.

Authors:  Xiaomin Shang; Changhong Wang; Yanting Fan; Gangqiang Guo; Fei Wang; Yuemeng Zhao; Fei Sheng; Jianxia Tang; Xiaoqin He; Xinyu Yu; Meihua Zhang; Guoding Zhu; Shigang Yin; Jianbing Mu; Richard Culleton; Jun Cao; Mei Jiang; Qingfeng Zhang
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

Review 2.  Emerging biology of noncoding RNAs in malaria parasites.

Authors:  Karina Simantov; Manish Goyal; Ron Dzikowski
Journal:  PLoS Pathog       Date:  2022-07-07       Impact factor: 7.464

3.  Chromosome splitting of Plasmodium berghei using the CRISPR/Cas9 system.

Authors:  Daniel Addo-Gyan; Haruka Matsushita; Enya Sora; Tsubasa Nishi; Masao Yuda; Naoaki Shinzawa; Shiroh Iwanaga
Journal:  PLoS One       Date:  2022-02-24       Impact factor: 3.240

Review 4.  The Modular Circuitry of Apicomplexan Cell Division Plasticity.

Authors:  Marc-Jan Gubbels; Isabelle Coppens; Kourosh Zarringhalam; Manoj T Duraisingh; Klemens Engelberg
Journal:  Front Cell Infect Microbiol       Date:  2021-04-12       Impact factor: 5.293

5.  Determination of the Stage Composition of Plasmodium Infections from Bulk Gene Expression Data.

Authors:  Kieran Tebben; Aliou Dia; David Serre
Journal:  mSystems       Date:  2022-07-05       Impact factor: 7.324

  5 in total

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