Literature DB >> 33424867

Integrated Analysis of the ETS Family in Melanoma Reveals a Regulatory Role of ETV7 in the Immune Microenvironment.

Hui Qu1, Hui Zhao2, Xi Zhang3, Yang Liu4, Feng Li1, Liyan Sun1, Zewen Song3.   

Abstract

The ETS family modulates immune response and drug efficiency to targeted therapies, but their role in melanoma is largely unclear. In this study, the ETS family was systematically analyzed in multiple public data sets. Bioinformatics tools were used to characterize the function of ETV7 in melanoma. A prognostic model was constructed using the LASSO Cox regression method. We found that ETV7 was the only differentially expressed gene with significant prognostic relevance in melanoma. Enrichment analysis of seven independent data sets indicated ETV7 participation in various immune-related pathways. ETV7 particularly showed a strong positive correlation with CD8+ T cell infiltration. The prognostic model based on ETV7 and its hub genes showed a relatively good predictive value in training and testing data sets. Thus, ETV7 can potentially regulate the immune microenvironment in melanoma.
Copyright © 2020 Qu, Zhao, Zhang, Liu, Li, Sun and Song.

Entities:  

Keywords:  CD8+ T cell; ETS family; ETV7; immune microenvironment; melanoma; single-cell RNA sequencing

Year:  2020        PMID: 33424867      PMCID: PMC7786291          DOI: 10.3389/fimmu.2020.612784

Source DB:  PubMed          Journal:  Front Immunol        ISSN: 1664-3224            Impact factor:   7.561


  66 in total

Review 1.  Role of Ets Proteins in Development, Differentiation, and Function of T-Cell Subsets.

Authors:  Mian Liu; Weiwu Gao; Jennifer C van Velkinburgh; Yuzhang Wu; Bing Ni; Yi Tian
Journal:  Med Res Rev       Date:  2015-08-24       Impact factor: 12.944

2.  Cancer statistics, 2019.

Authors:  Rebecca L Siegel; Kimberly D Miller; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2019-01-08       Impact factor: 508.702

3.  Macrophage-Derived CXCL9 and CXCL10 Are Required for Antitumor Immune Responses Following Immune Checkpoint Blockade.

Authors:  Imran G House; Peter Savas; Phillip K Darcy; Paul A Beavis; Junyun Lai; Amanda X Y Chen; Amanda J Oliver; Zhi L Teo; Kirsten L Todd; Melissa A Henderson; Lauren Giuffrida; Emma V Petley; Kevin Sek; Sherly Mardiana; Tuba N Gide; Camelia Quek; Richard A Scolyer; Georgina V Long; James S Wilmott; Sherene Loi
Journal:  Clin Cancer Res       Date:  2019-10-21       Impact factor: 12.531

Review 4.  Ternary complex factors: growth factor regulated transcriptional activators.

Authors:  R Treisman
Journal:  Curr Opin Genet Dev       Date:  1994-02       Impact factor: 5.578

5.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

Review 6.  Melanoma and Immune Checkpoint Inhibitors.

Authors:  Masutaka Furue; Takamichi Ito; Naoko Wada; Maiko Wada; Takafumi Kadono; Hiroshi Uchi
Journal:  Curr Oncol Rep       Date:  2018-03-23       Impact factor: 5.075

7.  ATXN1L, CIC, and ETS Transcription Factors Modulate Sensitivity to MAPK Pathway Inhibition.

Authors:  Belinda Wang; Elsa Beyer Krall; Andrew James Aguirre; Miju Kim; Hans Ragnar Widlund; Mihir Bhavik Doshi; Ewa Sicinska; Rita Sulahian; Amy Goodale; Glenn Spencer Cowley; Federica Piccioni; John Gerard Doench; David Edward Root; William Chun Hahn
Journal:  Cell Rep       Date:  2017-02-07       Impact factor: 9.423

Review 8.  ETS transcription factors and regulation of immunity.

Authors:  Sarah Gallant; Gary Gilkeson
Journal:  Arch Immunol Ther Exp (Warsz)       Date:  2006-05-02       Impact factor: 4.291

9.  The Ets-1 transcription factor is involved in the development and invasion of malignant melanoma.

Authors:  T Rothhammer; J C Hahne; A Florin; I Poser; F Soncin; N Wernert; A-K Bosserhoff
Journal:  Cell Mol Life Sci       Date:  2004-01       Impact factor: 9.261

10.  PAX3 and ETS1 synergistically activate MET expression in melanoma cells.

Authors:  J D Kubic; E C Little; J W Lui; T Iizuka; D Lang
Journal:  Oncogene       Date:  2014-12-22       Impact factor: 9.867

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  7 in total

1.  Bioinformatics-based analysis of SUMOylation-related genes in hepatocellular carcinoma reveals a role of upregulated SAE1 in promoting cell proliferation.

Authors:  Yang Liu; Xiang Wang; Xingzhi Zeng; Yinghua Wu; Xinrong Liu; Juan Tan; Xiaoyan Li
Journal:  Open Med (Wars)       Date:  2022-07-06

2.  Tumor purity as a prognosis and immunotherapy relevant feature in cervical cancer.

Authors:  Yali Deng; Zewen Song; Li Huang; Zhenni Guo; Binghua Tong; Meiqing Sun; Jin Zhao; Huina Zhang; Zhen Zhang; Guoyin Li
Journal:  Aging (Albany NY)       Date:  2021-11-29       Impact factor: 5.682

3.  ImmReg: the regulon atlas of immune-related pathways across cancer types.

Authors:  Tiantongfei Jiang; Weiwei Zhou; Zhenghong Chang; Haozhe Zou; Jing Bai; Qisen Sun; Tao Pan; Juan Xu; Yongsheng Li; Xia Li
Journal:  Nucleic Acids Res       Date:  2021-12-02       Impact factor: 16.971

4.  Comprehensive Analysis Identified ETV7 as a Potential Prognostic Biomarker in Bladder Cancer.

Authors:  Haimeng Li; Yibo Zhang; Shangyong Zheng
Journal:  Biomed Res Int       Date:  2021-12-09       Impact factor: 3.411

5.  Cuproptosis-Related Risk Score Predicts Prognosis and Characterizes the Tumor Microenvironment in Hepatocellular Carcinoma.

Authors:  Zhen Zhang; Xiangyang Zeng; Yinghua Wu; Yang Liu; Xi Zhang; Zewen Song
Journal:  Front Immunol       Date:  2022-07-11       Impact factor: 8.786

6.  Core immune cell infiltration signatures identify molecular subtypes and promote precise checkpoint immunotherapy in cutaneous melanoma.

Authors:  Zheng Zhu; Guoyin Li; Zhenning Li; Yinghua Wu; Yan Yang; Mingyang Wang; Huihua Zhang; Hui Qu; Zewen Song; Yuanmin He
Journal:  Front Immunol       Date:  2022-08-22       Impact factor: 8.786

7.  Exploration of immune response mechanisms in cadmium and copper co-exposed juvenile golden cuttlefish (Sepia esculenta) based on transcriptome profiling.

Authors:  Xiaokai Bao; Weijun Wang; Xipan Chen; Yanwei Feng; Xiaohui Xu; Guohua Sun; Bin Li; Xiumei Liu; Zan Li; Jianmin Yang
Journal:  Front Immunol       Date:  2022-09-23       Impact factor: 8.786

  7 in total

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