| Literature DB >> 33424337 |
Noura M Darwish1,2, Yousif M Elnahas3, Fatmah S AlQahtany4.
Abstract
Type 2 diabetes mellitus (T2D) is a metabolic disorder characterized by inappropriate insulin function. Despite wide progress in genome studies, defects in gene expression for diabetes prognosis still incompletely identified. Prolonged hyperglycemia activates NF-κB, which is a main player in vascular dysfunctions of diabetes. Activated NF-κB, triggers expression of various genes that promote inflammation and cell adhesion process. Alteration of pro-inflammatory and profibrotic gene expression contribute to the irreversible functional and structural changes in the kidney resulting in diabetic nephropathy (DN). To identify the effect of some important NF-κB related genes on mediation of DN progression, we divided our candidate genes on the basis of their function exerted in bloodstream into three categories (Proinflammatory; NF-κB, IL-1B, IL-6, TNF-α and VEGF); (Profibrotic; FN, ICAM-1, VCAM-1) and (Proliferative; MAPK-1 and EGF). We analyzed their expression profile in leukocytes of patients and explored their correlation to diabetic kidney injury features. Our data revealed the overexpression of both proinflammatory and profibrotic genes in DN group when compared to T2D group and were associated positively with each other in DN group indicating their possible role in DN progression. In DN patients, increased expression of proinflammatory genes correlated positively with glycemic control and inflammatory markers indicating their role in DN progression. Our data revealed that the persistent activation NF-κB and its related genes observed in hyperglycemia might contribute to DN progression and might be a good diagnostic and therapeutic target for DN progression. Large-scale studies are needed to evaluate the potential of these molecules to serve as disease biomarkers.Entities:
Keywords: 2hPPBG, 2 h post prandial blood glucose.; ACR, albumin creatinine ratio; BMI, body mass index.; DBP, Diastolic blood pressure.; DN, diabetic nephropathy.; FBS, fasting blood glucose.; FN; HDL, High density lipoprotein-cholesterol.; HbA1c, Glycosylated hemoglobin.; ICAM-1; IL-1β; IL-6; LDL, Low density lipoprotein-cholesterol.; M, male, F, female.; NF-κB; S.Cr, serum creatinine.; SBP, Systolic blood pressure.; T2D, type 2 diabetes mellitus without nephropathy.; TC, total cholesterol.; TGs, Triglyceride.; TNF-α; VCAM-1; VEGF; VLDL, Very low-density lipoprotein.; e-GFR, estimated glomerular filtration rate.
Year: 2020 PMID: 33424337 PMCID: PMC7783672 DOI: 10.1016/j.sjbs.2020.10.039
Source DB: PubMed Journal: Saudi J Biol Sci ISSN: 2213-7106 Impact factor: 4.219
Demographic characteristics of the study subjects.
| Variable | Group I | Group II | Group III | P value |
|---|---|---|---|---|
| Control | T2D | DN | ||
| Number | 30 | 50 | 50 | – |
| Gender (M:F) | 15:15 | 25:25 | 25:25 | – |
| Age (years) | 49.07 ± 3.02 | 51.82.2 ± 2.73 | 65.47 ± 3.12 | |
| DM Duration (yrs) | 0 ± 0 | 8.54 ± 4.03 | 14.60 ± 4.34 | |
| BMI (Kg/m2) | 24.07 ± 2.65 | 30.05 ± 1.76 | 36.01 ± 1.97 | P > 0.05 |
| SBP (mmHg) | 117.97 ± 0.96 | 121.96 ± 1.76 | 138.42 ± 3.85 | |
| DBP (mmHg) | 78.96 ± 2.76 | 79.65 ± 3.76 | 88.98 ± 6.86 |
Data are presented as mean ± SEM…
P > 0.05 = Significant difference if compared DN versus T2D.
p < 0.05 = Significant difference if compared DN versus T2D and control.
Primer sequence and annealing temperature.
| Gene | Name | Primer sequence | Annealing Temp | Amplicon size(bp) | Reference |
|---|---|---|---|---|---|
| GAPDH | Glyceraldehyde-3-phosphate dehydrogenase | 5′-CCACTCCTCCACCTTTGAC-3′ | 60 °C | 102 | ( |
| NF-κB | Nuclear factor kabba B | 5′-GCAGCACTACTTCTTGACCACC-3′ | 58 °C | 103 | ( |
| IL-1β | Interleukin beta −1 | 5′- GCAAGGGCTTCAGGCAGGCCGCG −3′ | 60 °C | 96 | ( |
| IL-6 | Interleukin-6 | 5′- GGTACATCCTCGACGGCATCT-3′ | 57 °C | 81 | ( |
| TNF-α | Tumor necrosis factor alpha | 5′- CTCTTCTGCCTGCTGCACTTTG-3′ | 59 °C | 135 | ( |
| VEGF | Vascular endothelial growth factor | 5′- CTACCTCCACCATGCCAGT-3′ | 58 °C | 101 | ( |
| ICAM-1 | Intercellular adhesion molecule 1 | 5′- GGCCGGCCAGCTTATACAC-3′ | 60 °C | 166 | ( |
| VCAM-1 | Vascular cell adhesion molecule 1 | 5′- TCAGATTGGAGACTCAGTCATGT-3′ | 59 °C | 109 | ( |
| FN | Fibronectin | 5′- CCATCGCAAACCGCTGCCAT | 60 °C | 153 | ( |
| MAPK-1 | Mitogen-Activated Protein Kinase-1 | 5′– CCTAAGGAAAAGCTCAAAGA-3′ | 60 °C | 179 | ( |
| EGF | Epidermal growth factor | 5′- GTGCAGCTTCAGGACCACAA-3′ | 57 °C | 67 | ( |
Demonstrating the P value of difference in the levels of biochemical markers in the patients.
| Variable | Group I | Group II | Group III | P value |
|---|---|---|---|---|
| Control | T2D | DN | ||
| FBG (mg/dl) | 78.0 ± 8.05 | 196.48 ± 7.73 | 205.57 ± 9.68 | aP < 0.05 |
| 2hPPBG (mg/dl) | 102.16 ± 13.11 | 264.15 ± 16.55 | 251.33 ± 21.07 | aP < 0.05 |
| HbA1c % | 5.07 ± 1.03 | 7.13 ± 1.32 | 10.74 ± 2.09 | bP < 0.05 |
| WBCs count | 6574 ± 98.65 | 7719 ± 65.05 | 15755 ± 107.03 | bP < 0.05 |
| CPR | 1.88 ± 0 0.57 | 7.8 ± 1.6 | 60.33 ± 5.76 | P > 0.05 |
| Fibrinogen | 300 ± 25.76 | 354 ± 10.76 | 576.7 ± 34.32 | bP < 0.05 |
| S. urea (mg /dl) | 28.02 ± 3.05 | 36.08 ± 6.34 | 145.0 ± 16.66 | bP < 0.05 |
| S. Cr (mg /dl) | 0.88 ± 0.26 | 0.79 ± 0.24 | 6.07 ± 0.45 | bP < 0.05 |
| S. Albumin (g/dl) | 4.97 ± 0.67 | 4.56 ± 0.18 | 2.13 ± 0.43 | bP < 0.05 |
| e-GFR (ml/min/1.73 m2) | 127.96 ± 9.0 | 119.99 ± 6.76 | 40.65 ± 7.02 | bP < 0.05 |
| ACR (mg/g) | 9.45 ± 2.06 | 13.2 ± 0.72 | 456.78 ± 32.6 | bP < 0.05 |
| TC (mg/dl) | 145.25 ± 8.42 | 177.86 ± 10.37 | 266.29 ± 12.67 | bP < 0.05 |
| TGs (mg/dl) | 98.0 ± 6.33 | 107.82 ± 9.04 | 188.75 ± 18.02 | bP < 0.05 |
| HDL (mg/dl) | 70.25 ± 7.48 | 65 ± 8.07 | 25.8 ± 4.32 | bP < 0.05 |
| LDL (mg/dl) | 81.5 ± 7.0 | 106.29 ± 9.06 | 156.91 ± 9.48 | bP < 0.05 |
| VLDL (mg/dl) | 27.78 ± 7.06 | 24.06 ± 5.0 | 30.07 ± 5.22 | p > 0.05 |
Data are expressed as mean ± SEM. Group comparison was done by a nova test.
aP < 0.05 = Significant difference if compared DN and T2D with control.
bP < 0.05 = Significant difference if DN compared with T2D patients and control.
Fig. 3.1Samples of leukocyte total RNA were assessed using Formaldehyde/ Formamide denaturant. Lane 1: RNA from control subject; Lane 2: RNA sample from T2D subject. Lanes 3: RNA sample from DN subject. The 28S and 18S ribosomal RNA bands are visible in the gel photo implying that the RNA samples are intact.
Differential expression of the three categories of genes under study in both T2D and DN.
| Proinflammatory Genes | Fold Change in T2D | Fold Change in DN | P value |
|---|---|---|---|
| NF-κB | 2.14 ± 0.97 | 6.32 ± 2.41 | <0.05 |
| IL-1β | 4.23 ± 2.01 | 10.07 ± 3.60 | <0.05 |
| IL-6 | 4 ± 1.33 | 12.43 ± 4.11 | <0.05 |
| TNF-α | 3.03 ± 1.23 | 7.23 ± 1.80 | <0.05 |
| Profibrotic Genes (ECM component) | Fold Change in T2D | Fold Change in DN | P value |
| FN | 1.21 ± 0.36 | 2.98 ± 0.87 | <0.05 |
| ICAM-1 | 1.30 ± 0.32 | 5 ± 2.43 | <0.05 |
| VCAM-1 | 1.06 ± 0.26 | 4.41 ± 1.23 | <0.05 |
| Proliferation Genes | Fold Change in T2D | Fold Change in DN | P value |
| MAPK-1 | 1.2 ± 0.45 | 1.32 ± 0.98 | >0.05 |
| EGF | 1.03 ± 0.36 | 1.54 ± 1.09 | >0.05 |
Fold was the ratio of both DN and T2D patient to control in each group. The differences in all listed genes between DN and T2D patients and controls were < 0.05.
P < 0.05 significant difference if compared DN versus T2D.
P > 0.05 = No significant difference if compared DN versus T2D.
Intercorrelation between genes in T2D group.
| Gene | NF-κB | IL1-β | IL-6 | TNF-α | VEGF | ICAM-1 | VCAM-1 | FN | MAPK-1 | EGF | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| P | r | P | r | P | r | P | r | P | r | P | r | P | r | P | r | P | r | P | r | |
| NF-κB | --- | --- | <0.05* | 0.56 | <0.05* | 0.50 | <0.05* | 0.68 | <0.05* | 0.73 | >0.05 | 0.19 | >0.05 | 0.31 | >0.05 | 0.22 | >0.05 | 0.21 | >0.05 | 0.23 |
| IL1-β | <0.05* | 0.56 | --- | --- | <0.05* | 0.62 | <0.05* | 0.72 | <0.05* | 0.58 | >0.05 | 0.32 | >0.05 | 0.22 | >0.05 | 0.37 | >0.05 | 0.29 | >0.05 | 0.43 |
| IL-6 | <0.05* | 0.50 | <0.05* | 0.62 | --- | --- | <0.05* | 0.56 | <0.05* | 0.71 | >0.05 | 0.42 | >0.05 | 0.38 | >0.05 | 0.23 | >0.05 | 0.30 | >0.05 | 0.32 |
| TNF-α | <0.05* | 0.68 | <0.05* | 0.72 | <0.05* | 0.56 | --- | --- | <0.05* | 0.77 | >0.05 | 0.32 | >0.05 | 0.26 | >0.05 | 0.34 | >0.05 | 0.20 | >0.05 | 0.30 |
| VEGF | <0.05* | 0.73 | <0.05* | 0.58 | <0.05* | 0.71 | <0.05* | 0.77 | --- | --- | >0.05 | 0.32 | >0.05 | 0.30 | >0.05 | 0.38 | >0.05 | 0.18 | >0.05 | 0.12 |
| ICAM-1 | >0.05 | 0.19 | >0.05 | 0.32 | >0.05 | 0.42 | >0.05 | 0.32 | >0.05 | 0.32 | --- | --- | >0.05 | 0.23 | >0.05 | 0.36 | >0.05 | 0.43 | >0.05 | 0.24 |
| VCAM-1 | >0.05 | 0.31 | >0.05 | 0.22 | >0.05 | 0.38 | >0.05 | 0.26 | >0.05 | 0.30 | >0.05 | 0.23 | --- | --- | >0.05 | 0.40 | >0.05 | 0.39 | >0.05 | 0.17 |
| FN | >0.05 | 0.22 | >0.05 | 0.37 | >0.05 | 0.23 | >0.05 | 0.34 | >0.05 | 0.38 | >0.05 | 0.36 | >0.05 | 0.40 | --- | --- | >0.05 | 0.13 | >0.05 | 0.43 |
| MAPK-1 | >0.05 | 0.21 | >0.05 | 0.29 | >0.05 | 0.30 | >0.05 | 0.20 | >0.05 | 0.18 | >0.05 | 0.43 | >0.05 | 0.39 | >0.05 | 0.13 | --- | --- | >0.05 | 0.36 |
| EGF | >0.05 | 0.23 | >0.05 | 0.43 | >0.05 | 0.32 | >0.05 | 0.30 | >0.05 | 0.12 | >0.05 | 0.24 | >0.05 | 0.17 | >0.05 | 0.43 | >0.05 | 0.36 | --- | --- |
Intercorrelation between genes in DN group.
| Gene | NF-κB | IL1-β | IL-6 | TNF-α | VEGF | ICAM-1 | VCAM-1 | FN | MAPK-1 | EGF | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| P | r | P | r | P | r | P | r | P | r | P | r | P | r | P | r | P | r | P | r | ||
| NF-κB | --- | --- | <0.05* | 0.65 | <0.05* | 0.70 | <0.05* | 0.55 | <0.05* | 0.53 | <0.05* | 0.61 | <0.05* | 0.67 | >0.05 | 0.34 | >0.05 | 0.22 | >0.05 | 0.23 | |
| IL1-β | <0.05* | 0.65 | --- | --- | <0.05* | 0.65 | <0.05* | 0.58 | <0.05* | 0.62 | <0.05* | 0.58 | <0.05* | 0.64 | >0.05 | 0.23 | >0.05 | 0.12 | >0.05 | 0.32 | |
| IL-6 | <0.05* | 0.70 | <0.05* | 0.65 | --- | --- | <0.05* | 0.73 | <0.05* | 0.56 | <0.05* | 0.63 | <0.05* | 0.51 | >0.05 | 0.18 | >0.05 | 0.43 | >0.05 | 0.21 | |
| TNF-α | <0.05* | 0.55 | <0.05* | 0.58 | <0.05* | 0.73 | --- | --- | >0.05 | 0.66 | <0.05* | 0.53 | <0.05* | 0.44 | >0.05 | 0.25 | >0.05 | 0.14 | >0.05 | 0.34 | |
| VEGF | <0.05* | 0.53 | <0.05* | 0.62 | <0.05* | 0.56 | >0.05 | 0.66 | --- | --- | <0.05* | 0.60 | <0.05* | 0.48 | >0.05 | 0.41 | >0.05 | 0.27 | >0.05 | 0.32 | |
| ICAM-1 | <0.05* | 0.61 | <0.05* | 0.58 | <0.05* | 0.63 | <0.05* | 0.53 | <0.05* | 0.60 | --- | --- | <0.05* | 0.49 | <0.05* | 0.65 | >0.05 | 0.45 | >0.05 | 0.17 | |
| VCAM-1 | <0.05* | 0.67 | <0.05* | 0.64 | <0.05* | 0.51 | >0.05 | 0.44 | >0.05 | 0.48 | <0.05* | 0.49 | --- | --- | <0.05* | 0.67 | >0.05 | 0.37 | >0.05 | 0.25 | |
| FN | >0.05 | 0.34 | >0.05 | 0.23 | >0.05 | 0.18 | >0.05 | 0.25 | >0.05 | 0.41 | <0.05* | 0.65 | <0.05* | 0.67 | --- | --- | >0.05 | 0.31 | >0.05 | 0.27 | |
| MAPK-1 | >0.05 | 0.22 | >0.05 | 0.12 | >0.05 | 0.43 | >0.05 | 0.14 | >0.05 | 0.27 | >0.05 | 0.45 | >0.05 | 0.37 | >0.05 | 0.31 | --- | --- | >0.05 | 0.30 | |
| EGF | >0.05 | 0.23 | >0.05 | 0.32 | >0.05 | 0.21 | >0.05 | 0.34 | >0.05 | 0.32 | >0.05 | 0.17 | >0.05 | 0.25 | >0.05 | 0.27 | >0.05 | 0.30 | --- | --- | |
Correlation between gene expression and clinical markers in T2D group.
| Gene | Inflammatory Markers | Glycemic control | Lipid profile | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRP | Fibrinogen | WBCs count | FBG | HbA1c | TC | |||||||
| r | p | r | p | r | p | r | p | r | p | r | p | |
| NF-κB | 0.81 | <0.05* | 0.63 | <0.05* | 0.70 | <0.05* | 0.61 | <0.05* | 0.74 | <0.05* | 0.55 | <0.05* |
| IL1-β | 0.73 | <0.05* | 0.56 | <0.05* | 0.65 | <0.05* | 0.7 | >0.05 | 0.47 | >0.05 | 0.46 | >0.05 |
| IL-6 | 0.63 | <0.05* | 0.66 | <0.05* | 0.59 | <0.05* | 0.35 | >0.05 | 0.86 | >0.05 | 0.22 | >0.05 |
| TNF-α | 0.59 | <0.05* | 0.65 | <0.05* | 0.48 | <0.05* | 0.55 | >0.05 | 0.43 | >0.05 | 0.27 | >0.05 |
| VEGF | 0.40 | >0.05 | 0.74 | <0.05* | 0.62 | <0.05* | 0.30 | >0.05 | 0.31 | >0.05 | 0.32 | >0.05 |
| ICAM-1 | 0.4 | >0.05 | 0.17 | >0.05 | 0.51 | >0.05 | 0.17 | >0.05 | 0.18 | >0.05 | 0.62 | >0.05 |
| VCAM-1 | 0.29 | >0.05 | 0.43 | >0.05 | 0.50 | >0.05 | 0.53 | >0.05 | 0.43 | >0.05 | 0.55 | >0.05 |
| FN | 0.34 | >0.05 | 0.31 | >0.05 | 0.49 | >0.05 | 0.41 | >0.05 | 0.23 | >0.05 | 0.49 | >0.05 |
| MAPK-1 | 0.33 | >0.05 | 0.23 | >0.05 | 0.15 | >0.05 | 0.3 | >0.05 | 0.55 | >0.05 | 0.37 | >0.05 |
| EGF | 043 | >0.05 | 0.26 | >0.05 | 0.35 | >0.05 | 0.26 | >0.05 | 0.43 | >0.05 | 0.26 | >0.05 |
Correlation between gene expression and clinical markers in DN group.
| Gene | Inflammatory Markers | Glycemic Markers | Lipid Markers | Kidney Profile Markers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRP | Fibrinogen | WBCs count | HbA1c | LDL | Creatinine | ACR | eGFR | |||||||||
| r | p | r | p | r | p | r | p | r | p | r | p | r | p | r | p | |
| NFk-B | 0.8 | <0.05* | 0.7 | <0.05* | 0.56 | <0.05* | 0.91 | <0.05* | 0.67 | <0.05* | 0.50 | <0.05* | 0.65 | <0.05* | −0.61 | <0.05* |
| IL1β | 0.7 | <0.05* | 0.55 | <0.05* | 0.54 | <0.05* | 0.85 | <0.05* | 0.91 | <0.05* | 0.47 | <0.05* | 0.52 | <0.05* | −0.5 | <0.05* |
| IL-6 | 0.63 | <0.05* | 0.51 | <0.05* | 0.93 | <0.05* | 0.64 | <0.05* | 0.85 | <0.05* | 0.51 | <0.05* | 0.59 | <0.05* | −0.65 | <0.05* |
| TNF-α | 0.73 | <0.05* | 0.65 | <0.05* | 0.65 | <0.05* | 0.58 | <0.05* | 0.64 | <0.05* | 0.88 | <0.05* | 0.48 | <0.05* | −0.76 | <0.05* |
| VEGF | 0.64 | <0.05* | 0.54 | <0.05* | 0.71 | <0.05* | 0.48 | <0.05* | 0.58 | <0.05* | 0.59 | <0.05* | 0.54 | <0.05* | −0.61 | <0.05* |
| ICAM-1 | 0.74 | <0.05* | 0.48 | <0.05* | 0.65 | <0.05* | 0.50 | <0.05* | 0.48 | <0.05* | 0.45 | <0.05* | 0.56 | <0.05* | −0.48 | <0.05* |
| VCAM-1 | 0.52 | <0.05* | 0.52 | <0.05* | 0.7 | <0.05* | 0.70 | <0.05* | 0.50 | >0.05 | 0.44 | <0.05* | 0.70 | <0.05* | −0.60 | <0.05* |
| FN | 0.26 | >0.05 | 0.14 | >0.05 | 0.54 | <0.05* | 0.91 | <0.05* | 0.30 | >0.05 | 0.40 | <0.05* | 0.67 | <0.05* | −0.56 | <0.05* |
| MAPK-1 | 0.31 | >0.05 | 0.15 | >0.05 | 0.37 | >0.05 | 0.15 | >0.05 | 0.41 | >0.05 | 0.34 | >0.05 | 0.28 | >0.05 | 0.47 | >0.05 |
| EGF | 0.43 | >0.05 | 0.23 | >0.05 | 0.34 | >0.05 | 0.28 | >0.05 | 0.17 | >0.05 | 0.24 | >0.05 | 0.32 | >0.05 | 0.32 | >0.05 |