| Literature DB >> 33417661 |
Ali A Ahmed1,2, Khalid I Amber2, Najah R Hadi1.
Abstract
INTRODUCTION: Clopidogrel, the first-choice antiplatelet agent for patient undergoing Percutaneous Coronary Intervention (PCI) along with Aspirin. Clopidogrel resistance is one of the major obstacles that cause MACE and failure of PCI. Kinase Insert Domain (KDR) gene responsible for VEGFR2 coding, the major receptor that translates VEGF ligand. The rs2305948 SNP in VEGFR2 gene has been documented to be involved atherogenesis and in CAD pathogenesis. AIM: To study the impact of KDR gene polymorphism rs2305948 on clopidogrel resistance in patients undergoing elective PCI.Entities:
Keywords: Clopidogrel resistance; VEGFR2
Year: 2020 PMID: 33417661 PMCID: PMC7780779 DOI: 10.5455/aim.2020.28.202-208
Source DB: PubMed Journal: Acta Inform Med ISSN: 0353-8109
Figure 1.(A) PCR product of rs2305948 with 151 bp. Ladder with 100 bp was used (B) Fragment of DNA for rs2305948, lanes number 1, 3,8,9,10,11 represent the wild genotype (CC), Lanes number 4 and 15 represents the heterozygous genotype (CT), Lane number 6 represents homozygous recessive genotype (TT). 50 bp and 100 bp ladders were used as ladders located on both side of the mold with the symbol (M), (C,D) genotype sequencing.
Digestion results for rs2305948
| Genotype | No of bands | Size of bp | |
|---|---|---|---|
| Wild type | CC | 2 | 19, 132 |
| Heterozygous | CT | 3 | 19, 132, 151 |
| Homozygous | TT | 1 | 151 |
Genotype and allele frequency results of rs2305948 before and after adjustment of (BMI, sex, age, HT, DM, and Smoking)
| rs2305948 | Control | CR | Unadjusted | Unadjusted | P-value | Adjusted | Adjusted | P-value |
|---|---|---|---|---|---|---|---|---|
| Co-dominant | ||||||||
| CC (Ref.) | 173 | 66 | ||||||
| CT | 36 | 38 | 2.76 | 1.61-4.73 | 0.000 | 3.13 | 1.76-5.57 | 0.000 |
| TT | 4 | 7 | 4.58 | 1.30-16.18 | 0.01 | 5.4 | 1.49-19.59 | 0.01 |
| Dominant | ||||||||
| TT+CT vs. CC | 40 | 45 | 2.86 | 1.71-4.76 | 0.000 | 3.28 | 1.90-5.68 | 0.000 |
| Recessive | ||||||||
| CC+CT (Ref.) | 209 | 104 | ||||||
| TT | 4 | 7 | 3.5 | 1.002-12.22 | 0.05 | 3.83 | 1.08-13.16 | 0.03 |
| Additive | ||||||||
| 2(TT)+CT | 44 | 52 | 3.09 | 1.89-5.06 | 0.0001 | |||
| MAF (T) | 10.32 | 23.42 | 3.51 | 1.006-12.28 | 0.04 | |||
Biochemical characteristic of CR patients with genotype of rs2305948 SNP in the VEGFR2 gene under co dominant model
| Clinical characteristic | CC | CT | TT | P-value |
|---|---|---|---|---|
| LDL | 213.84 ±13.73 | 204.68± 9.70 | 209.42±15.31 | 0.002 |
| VLDL | 47.31±3.25 | 48.50±4.84 | 47±3.41 | 0.28 |
| HDL | 32.46±2.85 | 32.34±3.98 | 34.28±5.40 | 0.38 |
| TG | 236.59±16.27 | 242.5±24.23 | 235±17.07 | 0.29 |
| Cholesterol | 293.63±11.38 | 285.52±7.14 | 290.71±11.70 | 0.000 |
| BMI | 28.64±4.71 | 28.84±4.09 | 29.95±4.55 | 0.762 |
| Platelet count | 259.84±26.64 | 266.21±22.29 | 243.71±8.26 | 0.073 |
| VEGFR2 | 7682.72±135.47 | 8458.81±617.67 | 10067.14±153.07 | 0.000 |
Biochemical characteristics of CR in patients with genotype of rs2305948 in VEGFR2 gene under dominant model.
| Clinical characteristic | CC (66 patients) | CT +TT (45 patients) | P-value |
|---|---|---|---|
| LDL (mg/dl) | 213.84 ±13.73 | 205.42± 10.69 | 0.0008 |
| VLDL (mg/dl) | 47.31±3.25 | 48.22±4.65 | 0.227 |
| HDL (mg/dl) | 32.46±2.85 | 32.64±4.22 | 0.788 |
| TG (mg/dl) | 236.59±16.27 | 241.11±23.27 | 0.230 |
| Cholesterol (mg/dl) | 293.63±11.38 | 286.33±8.07 | 0.0003 |
| BMI (kg/m2) | 28.64±4.71 | 29.01±4.13 | 0.760 |
| Platelet count (×103/mm3) | 259.84±26.64 | 262.71±22.25 | 0.553 |
| VEGFR2 (pg/ml) | 7682.72±135.47 | 8709±819.46 | 0.000 |
Results of HWE analysis for rs2305948
| subject | X2 | P value |
|---|---|---|
| CR | 0.232 | 0.630 |
| NCR | 1.634 | 0.201 |
| Both | 1.866 | 0.393 |
The sequence of rs2305948 SNP (38)
| SNP | Primers | Restric. Enz. |
|---|---|---|
| Rs2305948 | F-ATCCTTGGTCACTCCGGGGTA | RsaI |
Schedule protocol of PCR for rs2305948
| Kind of cycle | temperature | time | Cycle number |
|---|---|---|---|
| Initial Denaturation | 95 C | 5 minutes | 1 |
| denaturation | 95C | 1 minute | |
| Annealing | 58 C | 1 minute | 30 |
| Extension | 72 C | 1 minute | 1 |
| The final Extension | 72 C | 10 minutes | 1 |
Baseline characteristics of study groups
| Parameter | NCR (control) | CR | P value |
|---|---|---|---|
| No. (male/female) | 213 (159 /54) | 111 (74/37) | 0.13 |
| Age | 57.67 ± 7.99 | 55.82 ± 9.31 | 0.062 |
| BMI | 28.71 ± 4.23 | 29.42 ± 4.74 | 0.170 |
| Cholesterol (mg/dl) | 288.00 ± 9.64 | 290.67 ± 10.75 | 0.023 |
| TG | 240.79 ± 18.63 | 238.51 ± 19.45 | 0.299 |
| VLDL | 48.15 ± 3.67 | 47.70 ± 3.89 | 0.305 |
| LDL | 207.39 ± 11.53 | 210.43 ± 13.20 | 0.033 |
| HDL | 32.45 ± 3.19 | 32.54 ± 3.46 | 0.815 |
| Platelet count (×103/mm3) | 240.41 ± 49.62 | 249.21± 67.33 | 0.182 |
| KDR (pg/ml) | 8075 ± 687 | 8098± 731 | 0.779 |
| Diseased vessels | 157 | 90 | 0.569 |
| HT | 192 | 102 | 0.90 |
| DM | 119 | 60 | 0.86 |
| Smoker | 103 | 62 | 0.46 |
| CCBs | 37 | 22 | 0.653 |
| ACEI/ARBs | 51 | 35 | 0.268 |
| B-Blockers | 131 | 70 | 0.894 |
| Diuretics | 64 | 38 | 0.580 |
| PPI | 33 | 26 | 0.150 |
| Nitrates | 104 | 59 | 0.672 |