Literature DB >> 33417449

Multilabel Classification Models for the Prediction of Cross-Coupling Reaction Conditions.

Michael R Maser1, Alexander Y Cui2, Serim Ryou3, Travis J DeLano1, Yisong Yue2, Sarah E Reisman1.   

Abstract

Machine-learned ranking models have been developed for the prediction of substrate-specific cross-coupling reaction conditions. Data sets of published reactions were curated for Suzuki, Negishi, and C-N couplings, as well as Pauson-Khand reactions. String, descriptor, and graph encodings were tested as input representations, and models were trained to predict the set of conditions used in a reaction as a binary vector. Unique reagent dictionaries categorized by expert-crafted reaction roles were constructed for each data set, leading to context-aware predictions. We find that relational graph convolutional networks and gradient-boosting machines are very effective for this learning task, and we disclose a novel reaction-level graph attention operation in the top-performing model.

Entities:  

Year:  2021        PMID: 33417449     DOI: 10.1021/acs.jcim.0c01234

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  6 in total

1.  Unified Deep Learning Model for Multitask Reaction Predictions with Explanation.

Authors:  Jieyu Lu; Yingkai Zhang
Journal:  J Chem Inf Model       Date:  2022-03-10       Impact factor: 4.956

2.  Predicting reaction conditions from limited data through active transfer learning.

Authors:  Eunjae Shim; Joshua A Kammeraad; Ziping Xu; Ambuj Tewari; Tim Cernak; Paul M Zimmerman
Journal:  Chem Sci       Date:  2022-05-11       Impact factor: 9.969

3.  Inferring experimental procedures from text-based representations of chemical reactions.

Authors:  Alain C Vaucher; Philippe Schwaller; Joppe Geluykens; Vishnu H Nair; Anna Iuliano; Teodoro Laino
Journal:  Nat Commun       Date:  2021-05-06       Impact factor: 14.919

4.  Improving machine learning performance on small chemical reaction data with unsupervised contrastive pretraining.

Authors:  Mingjian Wen; Samuel M Blau; Xiaowei Xie; Shyam Dwaraknath; Kristin A Persson
Journal:  Chem Sci       Date:  2022-01-11       Impact factor: 9.825

5.  Machine Learning May Sometimes Simply Capture Literature Popularity Trends: A Case Study of Heterocyclic Suzuki-Miyaura Coupling.

Authors:  Wiktor Beker; Rafał Roszak; Agnieszka Wołos; Nicholas H Angello; Vandana Rathore; Martin D Burke; Bartosz A Grzybowski
Journal:  J Am Chem Soc       Date:  2022-03-08       Impact factor: 15.419

6.  Prediction of the Chemical Context for Buchwald-Hartwig Coupling Reactions.

Authors:  Samuel Genheden; Agnes Mårdh; Gustav Lahti; Ola Engkvist; Simon Olsson; Thierry Kogej
Journal:  Mol Inform       Date:  2022-02-22       Impact factor: 4.050

  6 in total

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