Literature DB >> 33410979

Implementation of biomolecular logic gate using DNA and electrically doped GaAs nano-pore: a first principle paradigm.

Debarati Dey1,2, Pradipta Roy3,4, Debashis De3,5.   

Abstract

One of the emerging areas of today's research arena is molecular modeling and molecular computing. The molecular logic gate can be theoretically implemented from single-strand DNA which consists of four basic nucleobases. In this study, the electronic transmission characteristics of DNA chain are investigated to form the logic gate. This biomolecular single-strand DNA chain is passed through an electrically doped gallium-arsenide nano-pore to achieve reasonably improved transmission along <1 1 1> direction. Current-voltage characteristic and device density of states with HOMO-LUMO plot of the device are explained along with the conductivity of the device to confirm the characteristics of some important logic gates like a universal gate. Ultimately the property of resistivity proves the law of Boolean logic of AND gate and universal logic gate, viz., NAND and NOR gate. All the electronic properties of the Boolean logic gate are explored based on the first principle approach by non-equilibrium Green's function coupled with density functional theory in room temperature.

Entities:  

Keywords:  DFT; NEGF; Oligonucleotide; Universal DNA logic gate; ssDNA

Year:  2021        PMID: 33410979     DOI: 10.1007/s00894-020-04623-x

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  16 in total

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Journal:  Sci Am       Date:  2000-06       Impact factor: 2.142

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Journal:  Nat Biotechnol       Date:  2001-03       Impact factor: 54.908

4.  DNA molecule provides a computing machine with both data and fuel.

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Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-24       Impact factor: 11.205

5.  Coherent electron transport through an azobenzene molecule: a light-driven molecular switch.

Authors:  C Zhang; M-H Du; H-P Cheng; X-G Zhang; A E Roitberg; J L Krause
Journal:  Phys Rev Lett       Date:  2004-04-15       Impact factor: 9.161

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Authors:  Akimitsu Okamoto; Kazuo Tanaka; Isao Saito
Journal:  J Am Chem Soc       Date:  2004-08-04       Impact factor: 15.419

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Authors:  L M Adleman
Journal:  Science       Date:  1994-11-11       Impact factor: 47.728

8.  Hairpin formation in synthetic oligonucleotides.

Authors:  C W Hilbers; C A Haasnoot; S H de Bruin; J J Joordens; G A van der Marel; J H van Boom
Journal:  Biochimie       Date:  1985 Jul-Aug       Impact factor: 4.079

9.  Programmable and autonomous computing machine made of biomolecules.

Authors:  Y Benenson; T Paz-Elizur; R Adar; E Keinan; Z Livneh; E Shapiro
Journal:  Nature       Date:  2001-11-22       Impact factor: 49.962

10.  An autonomous molecular computer for logical control of gene expression.

Authors:  Yaakov Benenson; Binyamin Gil; Uri Ben-Dor; Rivka Adar; Ehud Shapiro
Journal:  Nature       Date:  2004-04-28       Impact factor: 49.962

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