Literature DB >> 33410101

Genomic analyses of Biston suppressaria nucleopolyhedrovirus: a viral isolate obtained from the tea looper caterpillar, Biston suppressaria (Guenée, 1857).

Lucas Boeni de Oliveira1, Daniel Ricardo Sosa-Gómez2, Bergmann Morais Ribeiro3, Daniel M P Ardisson-Araújo4.   

Abstract

We described the complete genome sequence of a novel baculovirus isolate of species Buzura suppressaria nucleopolyhedrovirus, called by isolate CNPSo-25. The occlusion bodies were found to be polyhedral in shape and to contain virions with singly embedded nucleocapsids. The size of the genome is 121,377 bp with a G+C content of 36.7%. We annotated 131 ORFs that cover 90.42% of the genome. Moreover, phylogenetic inference indicated that CNPSo-25 is a member of genus Alphabaculovirus that clustered together with two other Chinese isolates of the same species. We called the virus by Biston suppressaria nucleopolyhedrovirus isolate CNPSo-25 (BisuNPV-CNPSo-25), as Buzura was placed inside the lepidopteran genus Biston. As expected, we detected intra-population variability in the virus sample when the novel isolate was compared to the Chinese isolates: 292 single nucleotide variants were found in the genome, with 181 affecting the protein product. The closest representatives of other species to BisuNPV-CNPSo-25 was found to be Sucra jujuba nucleopolyhedrovirus and Hyposidra talaca nucleopolyhedrovirus, two other virus isolates of geometrid caterpillars. The study of baculovirus genomes is of importance for the development of tools for insect pest biological control and biotechnology.

Entities:  

Keywords:  Alphabaculovirus; Biological control; Biston suppressaria; Buzura suppressaria nucleopolyhedrovirus; Geometrid

Mesh:

Substances:

Year:  2021        PMID: 33410101      PMCID: PMC7966673          DOI: 10.1007/s42770-020-00402-1

Source DB:  PubMed          Journal:  Braz J Microbiol        ISSN: 1517-8382            Impact factor:   2.476


  28 in total

1.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Authors:  Kazutaka Katoh; Kazuharu Misawa; Kei-ichi Kuma; Takashi Miyata
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

Review 2.  On the classification and nomenclature of baculoviruses: a proposal for revision.

Authors:  J A Jehle; G W Blissard; B C Bonning; J S Cory; E A Herniou; G F Rohrmann; D A Theilmann; S M Thiem; J M Vlak
Journal:  Arch Virol       Date:  2006-05-02       Impact factor: 2.574

Review 3.  Biological control and sustainable food production.

Authors:  J S Bale; J C van Lenteren; F Bigler
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-02-27       Impact factor: 6.237

4.  Complete genome sequence of the first non-Asian isolate of Bombyx mori nucleopolyhedrovirus.

Authors:  Daniel Mendes Pereira Ardisson-Araújo; Fernando Lucas Melo; Miguel de Souza Andrade; Rose Meire Costa Brancalhão; Sônia Nair Báo; Bergmann Morais Ribeiro
Journal:  Virus Genes       Date:  2014-09-12       Impact factor: 2.332

5.  Cytotoxicity analysis of three Bacillus thuringiensis subsp. israelensis δ-endotoxins towards insect and mammalian cells.

Authors:  Roberto Franco Teixeira Corrêa; Daniel Mendes Pereira Ardisson-Araújo; Rose Gomes Monnerat; Bergmann Morais Ribeiro
Journal:  PLoS One       Date:  2012-09-21       Impact factor: 3.240

Review 6.  Pesticide exposure, safety issues, and risk assessment indicators.

Authors:  Christos A Damalas; Ilias G Eleftherohorinos
Journal:  Int J Environ Res Public Health       Date:  2011-05-06       Impact factor: 3.390

7.  HMMER web server: interactive sequence similarity searching.

Authors:  Robert D Finn; Jody Clements; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2011-05-18       Impact factor: 16.971

8.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

Review 9.  The baculoviruses occlusion-derived virus: virion structure and function.

Authors:  Jeffery Slack; Basil M Arif
Journal:  Adv Virus Res       Date:  2007       Impact factor: 9.937

10.  Genome sequence and analysis of Buzura suppressaria nucleopolyhedrovirus: a group II Alphabaculovirus.

Authors:  Zheng Zhu; Feifei Yin; Xiaoping Liu; Dianhai Hou; Jun Wang; Lei Zhang; Basil Arif; Hualin Wang; Fei Deng; Zhihong Hu
Journal:  PLoS One       Date:  2014-01-24       Impact factor: 3.240

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