Literature DB >> 33409541

Tracking Membrane Protein Dynamics in Real Time.

Fredrik Orädd1, Magnus Andersson2.   

Abstract

Membrane proteins govern critical cellular processes and are central to human health and associated disease. Understanding of membrane protein function is obscured by the vast ranges of structural dynamics-both in the spatial and time regime-displayed in the protein and surrounding membrane. The membrane lipids have emerged as allosteric modulators of membrane protein function, which further adds to the complexity. In this review, we discuss several examples of membrane dependency. A particular focus is on how molecular dynamics (MD) simulation have aided to map membrane protein dynamics and how enhanced sampling methods can enable observing the otherwise inaccessible biological time scale. Also, time-resolved X-ray scattering in solution is highlighted as a powerful tool to track membrane protein dynamics, in particular when combined with MD simulation to identify transient intermediate states. Finally, we discuss future directions of how to further develop this promising approach to determine structural dynamics of both the protein and the surrounding lipids.

Entities:  

Keywords:  MD simulation; Membrane protein dynamics; X-ray solution scattering

Mesh:

Substances:

Year:  2021        PMID: 33409541      PMCID: PMC7936944          DOI: 10.1007/s00232-020-00165-8

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  124 in total

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Journal:  Biochim Biophys Acta       Date:  2015-03-16

5.  Ultrafast x-ray diffraction of transient molecular structures in solution.

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Journal:  Science       Date:  2005-07-14       Impact factor: 47.728

6.  Embedded cholesterol in the nicotinic acetylcholine receptor.

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Authors:  George Hedger; Mark S P Sansom
Journal:  Biochim Biophys Acta       Date:  2016-03-03

8.  Migration of PIP2 lipids on voltage-gated potassium channel surface influences channel deactivation.

Authors:  Liping Chen; Qiansen Zhang; Yunguang Qiu; Zanyuan Li; Zhuxi Chen; Hualiang Jiang; Yang Li; Huaiyu Yang
Journal:  Sci Rep       Date:  2015-10-15       Impact factor: 4.379

9.  Impact of Lipid Composition and Receptor Conformation on the Spatio-temporal Organization of μ-Opioid Receptors in a Multi-component Plasma Membrane Model.

Authors:  Kristen A Marino; Diego Prada-Gracia; Davide Provasi; Marta Filizola
Journal:  PLoS Comput Biol       Date:  2016-12-13       Impact factor: 4.475

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Authors:  Matthieu Chavent; Anna L Duncan; Mark Sp Sansom
Journal:  Curr Opin Struct Biol       Date:  2016-06-21       Impact factor: 7.786

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Journal:  Sci Adv       Date:  2021-11-17       Impact factor: 14.136

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