Yongseok Mun1, Jooyoung Kim1, Kyoung Jin Noh1, Soochahn Lee2, Seok Kim3, Soyoung Yi3, Kyu Hyung Park1, Sooyoung Yoo3, Dong Jin Chang4, Sang Jun Park5. 1. Department of Ophthalmology, Seoul National University College of Medicine, Seoul National University Bundang Hospital, 82, Gumi-ro 173 Beon-gil, Bundang-gu, Seongnam-si, Gyunggi-do, 13620, Republic of Korea. 2. School of Electrical Engineering, Kookmin University, 77, Jeongneung-ro, Seongbuk-gu, Seoul, Republic of Korea. 3. Healthcare ICT Research Center, Office of eHealth Research and Businesses, Seoul National University Bundang Hospital, 172, Dolma-ro, Bundang-gu, Seongnam-si, 13605, Gyunggi-do, Republic of Korea. 4. Department of Ophthalmology, College of medicine, The Catholic University of Korea, Yeouido St. Mary's Hospital, 10, 63-ro, Seoul, 07345, Yeongdeungpo-gu, Republic of Korea. 5. Department of Ophthalmology, Seoul National University College of Medicine, Seoul National University Bundang Hospital, 82, Gumi-ro 173 Beon-gil, Bundang-gu, Seongnam-si, Gyunggi-do, 13620, Republic of Korea. sangjunpark@snu.ac.kr.
Abstract
BACKGROUND: Although ophthalmic devices have made remarkable progress and are widely used, most lack standardization of both image review and results reporting systems, making interoperability unachievable. We developed and validated new software for extracting, transforming, and storing information from report images produced by ophthalmic examination devices to generate standardized, structured, and interoperable information to assist ophthalmologists in eye clinics. RESULTS: We selected report images derived from optical coherence tomography (OCT). The new software consists of three parts: (1) The Area Explorer, which determines whether the designated area in the configuration file contains numeric values or tomographic images; (2) The Value Reader, which converts images to text according to ophthalmic measurements; and (3) The Finding Classifier, which classifies pathologic findings from tomographic images included in the report. After assessment of Value Reader accuracy by human experts, all report images were converted and stored in a database. We applied the Value Reader, which achieved 99.67% accuracy, to a total of 433,175 OCT report images acquired in a single tertiary hospital from 07/04/2006 to 08/31/2019. The Finding Classifier provided pathologic findings (e.g., macular edema and subretinal fluid) and disease activity. Patient longitudinal data could be easily reviewed to document changes in measurements over time. The final results were loaded into a common data model (CDM), and the cropped tomographic images were loaded into the Picture Archive Communication System. CONCLUSIONS: The newly developed software extracts valuable information from OCT images and may be extended to other types of report image files produced by medical devices. Furthermore, powerful databases such as the CDM may be implemented or augmented by adding the information captured through our program.
BACKGROUND: Although ophthalmic devices have made remarkable progress and are widely used, most lack standardization of both image review and results reporting systems, making interoperability unachievable. We developed and validated new software for extracting, transforming, and storing information from report images produced by ophthalmic examination devices to generate standardized, structured, and interoperable information to assist ophthalmologists in eye clinics. RESULTS: We selected report images derived from optical coherence tomography (OCT). The new software consists of three parts: (1) The Area Explorer, which determines whether the designated area in the configuration file contains numeric values or tomographic images; (2) The Value Reader, which converts images to text according to ophthalmic measurements; and (3) The Finding Classifier, which classifies pathologic findings from tomographic images included in the report. After assessment of Value Reader accuracy by human experts, all report images were converted and stored in a database. We applied the Value Reader, which achieved 99.67% accuracy, to a total of 433,175 OCT report images acquired in a single tertiary hospital from 07/04/2006 to 08/31/2019. The Finding Classifier provided pathologic findings (e.g., macular edema and subretinal fluid) and disease activity. Patient longitudinal data could be easily reviewed to document changes in measurements over time. The final results were loaded into a common data model (CDM), and the cropped tomographic images were loaded into the Picture Archive Communication System. CONCLUSIONS: The newly developed software extracts valuable information from OCT images and may be extended to other types of report image files produced by medical devices. Furthermore, powerful databases such as the CDM may be implemented or augmented by adding the information captured through our program.
Entities:
Keywords:
Deep learning; Optical character recognition; Optical coherence tomography; Text detection
Authors: M R Hee; C A Puliafito; J S Duker; E Reichel; J G Coker; J R Wilkins; J S Schuman; E A Swanson; J G Fujimoto Journal: Ophthalmology Date: 1998-02 Impact factor: 12.079
Authors: George Hripcsak; Jon D Duke; Nigam H Shah; Christian G Reich; Vojtech Huser; Martijn J Schuemie; Marc A Suchard; Rae Woong Park; Ian Chi Kei Wong; Peter R Rijnbeek; Johan van der Lei; Nicole Pratt; G Niklas Norén; Yu-Chuan Li; Paul E Stang; David Madigan; Patrick B Ryan Journal: Stud Health Technol Inform Date: 2015
Authors: Marc A Suchard; Martijn J Schuemie; Harlan M Krumholz; Seng Chan You; RuiJun Chen; Nicole Pratt; Christian G Reich; Jon Duke; David Madigan; George Hripcsak; Patrick B Ryan Journal: Lancet Date: 2019-10-24 Impact factor: 79.321
Authors: Daniel S Kermany; Michael Goldbaum; Wenjia Cai; Carolina C S Valentim; Huiying Liang; Sally L Baxter; Alex McKeown; Ge Yang; Xiaokang Wu; Fangbing Yan; Justin Dong; Made K Prasadha; Jacqueline Pei; Magdalene Y L Ting; Jie Zhu; Christina Li; Sierra Hewett; Jason Dong; Ian Ziyar; Alexander Shi; Runze Zhang; Lianghong Zheng; Rui Hou; William Shi; Xin Fu; Yaou Duan; Viet A N Huu; Cindy Wen; Edward D Zhang; Charlotte L Zhang; Oulan Li; Xiaobo Wang; Michael A Singer; Xiaodong Sun; Jie Xu; Ali Tafreshi; M Anthony Lewis; Huimin Xia; Kang Zhang Journal: Cell Date: 2018-02-22 Impact factor: 41.582
Authors: Yongseok Mun; ChulHyoung Park; Da Yun Lee; Tong Min Kim; Ki Won Jin; Seok Kim; Yoo-Ri Chung; Kihwang Lee; Ji Hun Song; Young-Jung Roh; Donghyun Jee; Jin-Woo Kwon; Se Joon Woo; Kyu Hyung Park; Rae Woong Park; Sooyoung Yoo; Dong-Jin Chang; Sang Jun Park Journal: Sci Rep Date: 2022-06-17 Impact factor: 4.996