Literature DB >> 33407448

An innovative strategy for standardized, structured, and interoperable results in ophthalmic examinations.

Yongseok Mun1, Jooyoung Kim1, Kyoung Jin Noh1, Soochahn Lee2, Seok Kim3, Soyoung Yi3, Kyu Hyung Park1, Sooyoung Yoo3, Dong Jin Chang4, Sang Jun Park5.   

Abstract

BACKGROUND: Although ophthalmic devices have made remarkable progress and are widely used, most lack standardization of both image review and results reporting systems, making interoperability unachievable. We developed and validated new software for extracting, transforming, and storing information from report images produced by ophthalmic examination devices to generate standardized, structured, and interoperable information to assist ophthalmologists in eye clinics.
RESULTS: We selected report images derived from optical coherence tomography (OCT). The new software consists of three parts: (1) The Area Explorer, which determines whether the designated area in the configuration file contains numeric values or tomographic images; (2) The Value Reader, which converts images to text according to ophthalmic measurements; and (3) The Finding Classifier, which classifies pathologic findings from tomographic images included in the report. After assessment of Value Reader accuracy by human experts, all report images were converted and stored in a database. We applied the Value Reader, which achieved 99.67% accuracy, to a total of 433,175 OCT report images acquired in a single tertiary hospital from 07/04/2006 to 08/31/2019. The Finding Classifier provided pathologic findings (e.g., macular edema and subretinal fluid) and disease activity. Patient longitudinal data could be easily reviewed to document changes in measurements over time. The final results were loaded into a common data model (CDM), and the cropped tomographic images were loaded into the Picture Archive Communication System.
CONCLUSIONS: The newly developed software extracts valuable information from OCT images and may be extended to other types of report image files produced by medical devices. Furthermore, powerful databases such as the CDM may be implemented or augmented by adding the information captured through our program.

Entities:  

Keywords:  Deep learning; Optical character recognition; Optical coherence tomography; Text detection

Mesh:

Year:  2021        PMID: 33407448      PMCID: PMC7789748          DOI: 10.1186/s12911-020-01370-0

Source DB:  PubMed          Journal:  BMC Med Inform Decis Mak        ISSN: 1472-6947            Impact factor:   2.796


  11 in total

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Authors:  Peter Mildenberger; Marco Eichelberg; Eric Martin
Journal:  Eur Radiol       Date:  2001-09-15       Impact factor: 5.315

2.  Structure-function relationships using spectral-domain optical coherence tomography: comparison with scanning laser polarimetry.

Authors:  Florent Aptel; Romain Sayous; Vincent Fortoul; Sylvain Beccat; Philippe Denis
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3.  High-speed imaging of human retina in vivo with swept-source optical coherence tomography.

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Journal:  Opt Express       Date:  2006-12-25       Impact factor: 3.894

4.  Towards Accurate Segmentation of Retinal Vessels and the Optic Disc in Fundoscopic Images with Generative Adversarial Networks.

Authors:  Jaemin Son; Sang Jun Park; Kyu-Hwan Jung
Journal:  J Digit Imaging       Date:  2019-06       Impact factor: 4.056

Review 5.  Clinical Registries in Ophthalmology.

Authors:  Jeremy C K Tan; Alexander C Ferdi; Mark C Gillies; Stephanie L Watson
Journal:  Ophthalmology       Date:  2018-12-17       Impact factor: 12.079

6.  Development and Validation of Deep Learning Models for Screening Multiple Abnormal Findings in Retinal Fundus Images.

Authors:  Jaemin Son; Joo Young Shin; Hoon Dong Kim; Kyu-Hwan Jung; Kyu Hyung Park; Sang Jun Park
Journal:  Ophthalmology       Date:  2019-05-31       Impact factor: 12.079

7.  Topography of diabetic macular edema with optical coherence tomography.

Authors:  M R Hee; C A Puliafito; J S Duker; E Reichel; J G Coker; J R Wilkins; J S Schuman; E A Swanson; J G Fujimoto
Journal:  Ophthalmology       Date:  1998-02       Impact factor: 12.079

8.  Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers.

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9.  Comprehensive comparative effectiveness and safety of first-line antihypertensive drug classes: a systematic, multinational, large-scale analysis.

Authors:  Marc A Suchard; Martijn J Schuemie; Harlan M Krumholz; Seng Chan You; RuiJun Chen; Nicole Pratt; Christian G Reich; Jon Duke; David Madigan; George Hripcsak; Patrick B Ryan
Journal:  Lancet       Date:  2019-10-24       Impact factor: 79.321

10.  Identifying Medical Diagnoses and Treatable Diseases by Image-Based Deep Learning.

Authors:  Daniel S Kermany; Michael Goldbaum; Wenjia Cai; Carolina C S Valentim; Huiying Liang; Sally L Baxter; Alex McKeown; Ge Yang; Xiaokang Wu; Fangbing Yan; Justin Dong; Made K Prasadha; Jacqueline Pei; Magdalene Y L Ting; Jie Zhu; Christina Li; Sierra Hewett; Jason Dong; Ian Ziyar; Alexander Shi; Runze Zhang; Lianghong Zheng; Rui Hou; William Shi; Xin Fu; Yaou Duan; Viet A N Huu; Cindy Wen; Edward D Zhang; Charlotte L Zhang; Oulan Li; Xiaobo Wang; Michael A Singer; Xiaodong Sun; Jie Xu; Ali Tafreshi; M Anthony Lewis; Huimin Xia; Kang Zhang
Journal:  Cell       Date:  2018-02-22       Impact factor: 41.582

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  2 in total

Review 1.  Towards effective data sharing in ophthalmology: data standardization and data privacy.

Authors:  William Halfpenny; Sally L Baxter
Journal:  Curr Opin Ophthalmol       Date:  2022-07-12       Impact factor: 4.299

2.  Real-world treatment intensities and pathways of macular edema following retinal vein occlusion in Korea from Common Data Model in ophthalmology.

Authors:  Yongseok Mun; ChulHyoung Park; Da Yun Lee; Tong Min Kim; Ki Won Jin; Seok Kim; Yoo-Ri Chung; Kihwang Lee; Ji Hun Song; Young-Jung Roh; Donghyun Jee; Jin-Woo Kwon; Se Joon Woo; Kyu Hyung Park; Rae Woong Park; Sooyoung Yoo; Dong-Jin Chang; Sang Jun Park
Journal:  Sci Rep       Date:  2022-06-17       Impact factor: 4.996

  2 in total

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