Literature DB >> 33407175

Development and validation of prediction model to estimate 10-year risk of all-cause mortality using modern statistical learning methods: a large population-based cohort study and external validation.

Olesya Ajnakina1,2, Deborah Agbedjro3, Ryan McCammon4, Jessica Faul4, Robin M Murray5,6, Daniel Stahl3, Andrew Steptoe7.   

Abstract

BACKGROUND: In increasingly ageing populations, there is an emergent need to develop a robust prediction model for estimating an individual absolute risk for all-cause mortality, so that relevant assessments and interventions can be targeted appropriately. The objective of the study was to derive, evaluate and validate (internally and externally) a risk prediction model allowing rapid estimations of an absolute risk of all-cause mortality in the following 10 years.
METHODS: For the model development, data came from English Longitudinal Study of Ageing study, which comprised 9154 population-representative individuals aged 50-75 years, 1240 (13.5%) of whom died during the 10-year follow-up. Internal validation was carried out using Harrell's optimism-correction procedure; external validation was carried out using Health and Retirement Study (HRS), which is a nationally representative longitudinal survey of adults aged ≥50 years residing in the United States. Cox proportional hazards model with regularisation by the least absolute shrinkage and selection operator, where optimisation parameters were chosen based on repeated cross-validation, was employed for variable selection and model fitting. Measures of calibration, discrimination, sensitivity and specificity were determined in the development and validation cohorts.
RESULTS: The model selected 13 prognostic factors of all-cause mortality encompassing information on demographic characteristics, health comorbidity, lifestyle and cognitive functioning. The internally validated model had good discriminatory ability (c-index=0.74), specificity (72.5%) and sensitivity (73.0%). Following external validation, the model's prediction accuracy remained within a clinically acceptable range (c-index=0.69, calibration slope β=0.80, specificity=71.5% and sensitivity=70.6%). The main limitation of our model is twofold: 1) it may not be applicable to nursing home and other institutional populations, and 2) it was developed and validated in the cohorts with predominately white ethnicity.
CONCLUSIONS: A new prediction model that quantifies absolute risk of all-cause mortality in the following 10-years in the general population has been developed and externally validated. It has good prediction accuracy and is based on variables that are available in a variety of care and research settings. This model can facilitate identification of high risk for all-cause mortality older adults for further assessment or interventions.

Entities:  

Keywords:  Absolute risk; Mortality; Population-based longitudinal study; Prognostic factors; Statistical learning; Survival

Mesh:

Year:  2021        PMID: 33407175      PMCID: PMC7789636          DOI: 10.1186/s12874-020-01204-7

Source DB:  PubMed          Journal:  BMC Med Res Methodol        ISSN: 1471-2288            Impact factor:   4.615


  46 in total

1.  Using the outcome for imputation of missing predictor values was preferred.

Authors:  Karel G M Moons; Rogier A R T Donders; Theo Stijnen; Frank E Harrell
Journal:  J Clin Epidemiol       Date:  2006-06-19       Impact factor: 6.437

2.  Translating clinical research into clinical practice: impact of using prediction rules to make decisions.

Authors:  Brendan M Reilly; Arthur T Evans
Journal:  Ann Intern Med       Date:  2006-02-07       Impact factor: 25.391

3.  Prognosis and prognostic research: application and impact of prognostic models in clinical practice.

Authors:  Karel G M Moons; Douglas G Altman; Yvonne Vergouwe; Patrick Royston
Journal:  BMJ       Date:  2009-06-04

4.  Multiple imputation in the presence of high-dimensional data.

Authors:  Yize Zhao; Qi Long
Journal:  Stat Methods Med Res       Date:  2013-11-25       Impact factor: 3.021

5.  A Selective Overview of Variable Selection in High Dimensional Feature Space.

Authors:  Jianqing Fan; Jinchi Lv
Journal:  Stat Sin       Date:  2010-01       Impact factor: 1.261

6.  Calculating the sample size required for developing a clinical prediction model.

Authors:  Richard D Riley; Joie Ensor; Kym I E Snell; Frank E Harrell; Glen P Martin; Johannes B Reitsma; Karel G M Moons; Gary Collins; Maarten van Smeden
Journal:  BMJ       Date:  2020-03-18

7.  Predicting 10-year mortality for older adults.

Authors:  Marisa Cruz; Kenneth Covinsky; Eric W Widera; Irena Stijacic-Cenzer; Sei J Lee
Journal:  JAMA       Date:  2013-03-06       Impact factor: 56.272

8.  Trends in life expectancy and age-specific mortality in England and Wales, 1970-2016, in comparison with a set of 22 high-income countries: an analysis of vital statistics data.

Authors:  David A Leon; Dmitry A Jdanov; Vladimir M Shkolnikov
Journal:  Lancet Public Health       Date:  2019-11

9.  Modern modelling techniques are data hungry: a simulation study for predicting dichotomous endpoints.

Authors:  Tjeerd van der Ploeg; Peter C Austin; Ewout W Steyerberg
Journal:  BMC Med Res Methodol       Date:  2014-12-22       Impact factor: 4.615

10.  External validation of clinical prediction models using big datasets from e-health records or IPD meta-analysis: opportunities and challenges.

Authors:  Richard D Riley; Joie Ensor; Kym I E Snell; Thomas P A Debray; Doug G Altman; Karel G M Moons; Gary S Collins
Journal:  BMJ       Date:  2016-06-22
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  2 in total

1.  Interplay between polygenic propensity for ageing-related traits and the consumption of fruits and vegetables on future dementia diagnosis.

Authors:  Emma Ruby Francis; Dorina Cadar; Andrew Steptoe; Olesya Ajnakina
Journal:  BMC Psychiatry       Date:  2022-01-30       Impact factor: 3.630

Review 2.  A Novel Score for mHealth Apps to Predict and Prevent Mortality: Further Validation and Adaptation to the US Population Using the US National Health and Nutrition Examination Survey Data Set.

Authors:  Shatha Elnakib; Andres I Vecino-Ortiz; Dustin G Gibson; Smisha Agarwal; Antonio J Trujillo; Yifan Zhu; Alain B Labrique
Journal:  J Med Internet Res       Date:  2022-06-14       Impact factor: 7.076

  2 in total

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