Literature DB >> 33406068

Improving probabilistic infectious disease forecasting through coherence.

Graham Casey Gibson1,2, Kelly R Moran1,3, Nicholas G Reich2, Dave Osthus1.   

Abstract

With an estimated $10.4 billion in medical costs and 31.4 million outpatient visits each year, influenza poses a serious burden of disease in the United States. To provide insights and advance warning into the spread of influenza, the U.S. Centers for Disease Control and Prevention (CDC) runs a challenge for forecasting weighted influenza-like illness (wILI) at the national and regional level. Many models produce independent forecasts for each geographical unit, ignoring the constraint that the national wILI is a weighted sum of regional wILI, where the weights correspond to the population size of the region. We propose a novel algorithm that transforms a set of independent forecast distributions to obey this constraint, which we refer to as probabilistically coherent. Enforcing probabilistic coherence led to an increase in forecast skill for 79% of the models we tested over multiple flu seasons, highlighting the importance of respecting the forecasting system's geographical hierarchy.

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Mesh:

Year:  2021        PMID: 33406068      PMCID: PMC7837472          DOI: 10.1371/journal.pcbi.1007623

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  16 in total

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Journal:  Epidemics       Date:  2019-01-17       Impact factor: 4.396

2.  Using Google Flu Trends data in forecasting influenza-like-illness related ED visits in Omaha, Nebraska.

Authors:  Ozgur M Araz; Dan Bentley; Robert L Muelleman
Journal:  Am J Emerg Med       Date:  2014-06-12       Impact factor: 2.469

3.  On the multibin logarithmic score used in the FluSight competitions.

Authors:  Johannes Bracher
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-26       Impact factor: 11.205

4.  Results from the second year of a collaborative effort to forecast influenza seasons in the United States.

Authors:  Matthew Biggerstaff; Michael Johansson; David Alper; Logan C Brooks; Prithwish Chakraborty; David C Farrow; Sangwon Hyun; Sasikiran Kandula; Craig McGowan; Naren Ramakrishnan; Roni Rosenfeld; Jeffrey Shaman; Rob Tibshirani; Ryan J Tibshirani; Alessandro Vespignani; Wan Yang; Qian Zhang; Carrie Reed
Journal:  Epidemics       Date:  2018-02-24       Impact factor: 4.396

5.  Estimates of deaths associated with seasonal influenza --- United States, 1976-2007.

Authors: 
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2010-08-27       Impact factor: 17.586

6.  Forecasting seasonal influenza with a state-space SIR model.

Authors:  Dave Osthus; Kyle S Hickmann; Petruţa C Caragea; Dave Higdon; Sara Y Del Valle
Journal:  Ann Appl Stat       Date:  2017-04-08       Impact factor: 2.083

7.  Collaborative efforts to forecast seasonal influenza in the United States, 2015-2016.

Authors:  Craig J McGowan; Matthew Biggerstaff; Michael Johansson; Karyn M Apfeldorf; Michal Ben-Nun; Logan Brooks; Matteo Convertino; Madhav Erraguntla; David C Farrow; John Freeze; Saurav Ghosh; Sangwon Hyun; Sasikiran Kandula; Joceline Lega; Yang Liu; Nicholas Michaud; Haruka Morita; Jarad Niemi; Naren Ramakrishnan; Evan L Ray; Nicholas G Reich; Pete Riley; Jeffrey Shaman; Ryan Tibshirani; Alessandro Vespignani; Qian Zhang; Carrie Reed
Journal:  Sci Rep       Date:  2019-01-24       Impact factor: 4.379

8.  Reply to Bracher: Scoring probabilistic forecasts to maximize public health interpretability.

Authors:  Nicholas G Reich; Dave Osthus; Evan L Ray; Teresa K Yamana; Matthew Biggerstaff; Michael A Johansson; Roni Rosenfeld; Jeffrey Shaman
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-26       Impact factor: 11.205

9.  Forecasting influenza-like illness dynamics for military populations using neural networks and social media.

Authors:  Svitlana Volkova; Ellyn Ayton; Katherine Porterfield; Courtney D Corley
Journal:  PLoS One       Date:  2017-12-15       Impact factor: 3.240

10.  Evaluation of mechanistic and statistical methods in forecasting influenza-like illness.

Authors:  Sasikiran Kandula; Teresa Yamana; Sen Pei; Wan Yang; Haruka Morita; Jeffrey Shaman
Journal:  J R Soc Interface       Date:  2018-07       Impact factor: 4.118

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  1 in total

1.  Fast and accurate influenza forecasting in the United States with Inferno.

Authors:  Dave Osthus
Journal:  PLoS Comput Biol       Date:  2022-01-31       Impact factor: 4.475

  1 in total

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