Literature DB >> 33404829

Bioinformatics: new tools and applications in life science and personalized medicine.

Iuliia Branco1, Altino Choupina2.   

Abstract

While we have a basic understanding of the functioning of the gene when coding sequences of specific proteins, we feel the lack of information on the role that DNA has on specific diseases or functions of thousands of proteins that are produced. Bioinformatics combines the methods used in the collection, storage, identification, analysis, and correlation of this huge and complex information. All this work produces an "ocean" of information that can only be "sailed" with the help of computerized methods. The goal is to provide scientists with the right means to explain normal biological processes, dysfunctions of these processes which give rise to disease and approaches that allow the discovery of new medical cures. Recently, sequencing platforms, a large scale of genomes and transcriptomes, have created new challenges not only to the genomics but especially for bioinformatics. The intent of this article is to compile a list of tools and information resources used by scientists to treat information from the massive sequencing of recent platforms to new generations and the applications of this information in different areas of life sciences including medicine. KEY POINTS: • Biological data mining • Omic approaches • From genotype to phenotype.

Entities:  

Keywords:  Applications; Bioinformatics; Life science; Personalized medicine; Sequencing; Tools

Mesh:

Year:  2021        PMID: 33404829     DOI: 10.1007/s00253-020-11056-2

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  26 in total

1.  BIND: the Biomolecular Interaction Network Database.

Authors:  Gary D Bader; Doron Betel; Christopher W V Hogue
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 2.  Making sense of deep sequencing.

Authors:  D Goldman; K Domschke
Journal:  Int J Neuropsychopharmacol       Date:  2014-06-13       Impact factor: 5.176

3.  In Silico PCR Tools for a Fast Primer, Probe, and Advanced Searching.

Authors:  Ruslan Kalendar; Alexandr Muterko; Malika Shamekova; Kabyl Zhambakin
Journal:  Methods Mol Biol       Date:  2017

4.  SuperTarget and Matador: resources for exploring drug-target relationships.

Authors:  Stefan Günther; Michael Kuhn; Mathias Dunkel; Monica Campillos; Christian Senger; Evangelia Petsalaki; Jessica Ahmed; Eduardo Garcia Urdiales; Andreas Gewiess; Lars Juhl Jensen; Reinhard Schneider; Roman Skoblo; Robert B Russell; Philip E Bourne; Peer Bork; Robert Preissner
Journal:  Nucleic Acids Res       Date:  2007-10-16       Impact factor: 16.971

5.  JPred4: a protein secondary structure prediction server.

Authors:  Alexey Drozdetskiy; Christian Cole; James Procter; Geoffrey J Barton
Journal:  Nucleic Acids Res       Date:  2015-04-16       Impact factor: 16.971

6.  CATH: an expanded resource to predict protein function through structure and sequence.

Authors:  Natalie L Dawson; Tony E Lewis; Sayoni Das; Jonathan G Lees; David Lee; Paul Ashford; Christine A Orengo; Ian Sillitoe
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

7.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; Eric W Sayers
Journal:  Nucleic Acids Res       Date:  2009-11-12       Impact factor: 16.971

8.  LocTree2 predicts localization for all domains of life.

Authors:  Tatyana Goldberg; Tobias Hamp; Burkhard Rost
Journal:  Bioinformatics       Date:  2012-09-15       Impact factor: 6.937

9.  Methy-Pipe: an integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis.

Authors:  Peiyong Jiang; Kun Sun; Fiona M F Lun; Andy M Guo; Huating Wang; K C Allen Chan; Rossa W K Chiu; Y M Dennis Lo; Hao Sun
Journal:  PLoS One       Date:  2014-06-19       Impact factor: 3.240

Review 10.  The sequence of sequencers: The history of sequencing DNA.

Authors:  James M Heather; Benjamin Chain
Journal:  Genomics       Date:  2015-11-10       Impact factor: 5.736

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  2 in total

1.  Designing a novel E2-IFN-γ fusion protein against CSFV by immunoinformatics and structural vaccinology approaches.

Authors:  Yanmin Zhang; Weijian Zhang; Jun Cheng; Xuping Liu; Shiwei Miao; Wen-Song Tan; Liang Zhao
Journal:  Appl Microbiol Biotechnol       Date:  2022-05-07       Impact factor: 4.813

Review 2.  Chromatographic-Based Platforms as New Avenues for Scientific Progress and Sustainability.

Authors:  José S Câmara; Cátia Martins; Jorge A M Pereira; Rosa Perestrelo; Sílvia M Rocha
Journal:  Molecules       Date:  2022-08-18       Impact factor: 4.927

  2 in total

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