| Literature DB >> 33401773 |
Luís Neto1, Nádia Pinto2,3,4, Alberto Proença1,5, António Amorim2,3,6, Eduardo Conde-Sousa2,7.
Abstract
Forensic genetics is a fast-growing field that frequently requires DNA-based taxonomy, namely, when evidence are parts of specimens, often highly processed in food, potions, or ointments. Reference DNA-sequences libraries, such as BOLD or GenBank, are imperative tools for taxonomic assignment, particularly when morphology is inadequate for classification. The auditing and curation of these datasets require reliable mechanisms, preferably with automated data preprocessing. Software tools were developed to grade these datasets considering as primary criterion the number of records, which is not compliant with forensic standards, where the priority is validation from independent sources. Moreover, 4SpecID is an efficient software tool developed to audit and annotate reference libraries, specifically designed for forensic applications. Its intuitive user-friendly interface virtually accesses any database and includes specific data mining functions tuned for the widespread BOLD repositories. The built tool was evaluated in laptop MacBook and a dual-Xeon server with a large BOLD dataset (Culicidae, 36,115 records), and the best execution time to grade the dataset on the laptop was 0.28 s. Datasets of Bovidae and Felidae families were used to evaluate the quality of the tool and the relevance of independent sources validation.Entities:
Keywords: BOLD system; DNA; barcoding; database auditing; efficient software; forensics; genetics; species identification; taxonomy
Mesh:
Year: 2021 PMID: 33401773 PMCID: PMC7824288 DOI: 10.3390/genes12010061
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096