Literature DB >> 33397927

Humanizing the yeast origin recognition complex.

Clare S K Lee1, Ming Fung Cheung2,3, Jinsen Li4, Yongqian Zhao3,5, Wai Hei Lam1, Vincy Ho2,3, Remo Rohs4, Yuanliang Zhai6, Danny Leung7,8, Bik-Kwoon Tye9,10,11.   

Abstract

The Origin Recognition Complex (ORC) is an evolutionarily conserved six-subunit protein complex that binds specific sites at many locations to coordinately replicate the entire eukaryote genome. Though highly conserved in structure, ORC's selectivity for replication origins has diverged tremendously between yeasts and humans to adapt to vastly different life cycles. In this work, we demonstrate that the selectivity determinant of ORC for DNA binding lies in a 19-amino acid insertion helix in the Orc4 subunit, which is present in yeast but absent in human. Removal of this motif from Orc4 transforms the yeast ORC, which selects origins based on base-specific binding at defined locations, into one whose selectivity is dictated by chromatin landscape and afforded with plasticity, as reported for human. Notably, the altered yeast ORC has acquired an affinity for regions near transcriptional start sites (TSSs), which the human ORC also favors.

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Year:  2021        PMID: 33397927      PMCID: PMC7782691          DOI: 10.1038/s41467-020-20277-y

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  50 in total

Review 1.  In search of the holy replicator.

Authors:  David M Gilbert
Journal:  Nat Rev Mol Cell Biol       Date:  2004-10       Impact factor: 94.444

2.  Spatio-temporal re-organization of replication foci accompanies replication domain consolidation during human pluripotent stem cell lineage specification.

Authors:  Korey A Wilson; Andrew G Elefanty; Edouard G Stanley; David M Gilbert
Journal:  Cell Cycle       Date:  2016-07-19       Impact factor: 4.534

3.  Selectivity of ORC binding sites and the relation to replication timing, fragile sites, and deletions in cancers.

Authors:  Benoit Miotto; Zhe Ji; Kevin Struhl
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-19       Impact factor: 11.205

4.  The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks.

Authors:  R Y Chuang; T J Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

5.  Multiple functions for Mcm2-7 ATPase motifs during replication initiation.

Authors:  Sukhyun Kang; Megan D Warner; Stephen P Bell
Journal:  Mol Cell       Date:  2014-07-31       Impact factor: 17.970

6.  The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.

Authors:  Franck Picard; Jean-Charles Cadoret; Benjamin Audit; Alain Arneodo; Adriana Alberti; Christophe Battail; Laurent Duret; Marie-Noelle Prioleau
Journal:  PLoS Genet       Date:  2014-05-01       Impact factor: 5.917

7.  DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.

Authors:  Tianyin Zhou; Lin Yang; Yan Lu; Iris Dror; Ana Carolina Dantas Machado; Tahereh Ghane; Rosa Di Felice; Remo Rohs
Journal:  Nucleic Acids Res       Date:  2013-05-22       Impact factor: 16.971

8.  Prediction and analysis of nucleosome exclusion regions in the human genome.

Authors:  Ahmed Radwan; Akmal Younis; Peter Luykx; Sawsan Khuri
Journal:  BMC Genomics       Date:  2008-04-22       Impact factor: 3.969

9.  ATPase-dependent quality control of DNA replication origin licensing.

Authors:  Jordi Frigola; Dirk Remus; Amina Mehanna; John F X Diffley
Journal:  Nature       Date:  2013-03-10       Impact factor: 49.962

10.  Structural basis of Mcm2-7 replicative helicase loading by ORC-Cdc6 and Cdt1.

Authors:  Zuanning Yuan; Alberto Riera; Lin Bai; Jingchuan Sun; Saikat Nandi; Christos Spanos; Zhuo Angel Chen; Marta Barbon; Juri Rappsilber; Bruce Stillman; Christian Speck; Huilin Li
Journal:  Nat Struct Mol Biol       Date:  2017-02-13       Impact factor: 15.369

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  6 in total

Review 1.  Efficiency and equity in origin licensing to ensure complete DNA replication.

Authors:  Liu Mei; Jeanette Gowen Cook
Journal:  Biochem Soc Trans       Date:  2021-11-01       Impact factor: 4.919

2.  Exogenous artificial DNA forms chromatin structure with active transcription in yeast.

Authors:  Jianting Zhou; Chao Zhang; Ran Wei; Mingzhe Han; Songduo Wang; Kaiguang Yang; Lihua Zhang; Weigang Chen; Mingzhang Wen; Cheng Li; Wei Tao; Ying-Jin Yuan
Journal:  Sci China Life Sci       Date:  2021-12-27       Impact factor: 10.372

Review 3.  Replication initiation: Implications in genome integrity.

Authors:  Yo-Chuen Lin; Supriya G Prasanth
Journal:  DNA Repair (Amst)       Date:  2021-05-11

4.  Nucleosome-directed replication origin licensing independent of a consensus DNA sequence.

Authors:  Sai Li; Michael R Wasserman; Olga Yurieva; Lu Bai; Michael E O'Donnell; Shixin Liu
Journal:  Nat Commun       Date:  2022-08-23       Impact factor: 17.694

5.  The Fkh1 Forkhead associated domain promotes ORC binding to a subset of DNA replication origins in budding yeast.

Authors:  Timothy Hoggard; Allison J Hollatz; Rachel E Cherney; Melissa R Seman; Catherine A Fox
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

6.  Meiotic recombination mirrors patterns of germline replication in mice and humans.

Authors:  Florencia Pratto; Kevin Brick; Gang Cheng; Kwan-Wood Gabriel Lam; Jeffrey M Cloutier; Daisy Dahiya; Stephen R Wellard; Philip W Jordan; R Daniel Camerini-Otero
Journal:  Cell       Date:  2021-07-13       Impact factor: 66.850

  6 in total

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