Literature DB >> 33396506

Ab Initio Molecular Dynamics Simulations of the Interaction between Organic Phosphates and Goethite.

Prasanth B Ganta1, Oliver Kühn1,2, Ashour A Ahmed1,2.   

Abstract

Today's fertilizers rely heavily on mining phosphorus (P) rocks. These rocks are known to become exhausted in near future, and therefore effective P use is crucial to avoid food shortage. A substantial amount of P from fertilizers gets adsorbed onto soil minerals to become unavailable to plants. Understanding P interaction with these minerals would help efforts that improve P efficiency. To this end, we performed a molecular level analysis of the interaction of common organic P compounds (glycerolphosphate (GP) and inositol hexaphosphate (IHP)) with the abundant soil mineral (goethite) in presence of water. Molecular dynamics simulations are performed for goethite-IHP/GP-water complexes using the multiscale quantum mechanics/molecular mechanics method. Results show that GP forms monodentate (M) and bidentate mononuclear (B) motifs with B being more stable than M. IHP interacts through multiple phosphate groups with the 3M motif being most stable. The order of goethite-IHP/GP interaction energies is GP M < GP B < IHP M < IHP 3M. Water is important in these interactions as multiple proton transfers occur and hydrogen bonds are formed between goethite-IHP/GP complexes and water. We also present theoretically calculated infrared spectra which match reasonably well with frequencies reported in literature.

Entities:  

Keywords:  MD simulations; P–inefficiency; QMMM; binding energies; glycerolphosphate; goethite; infrared spectra; inositol hexaphosphate

Mesh:

Substances:

Year:  2020        PMID: 33396506      PMCID: PMC7795625          DOI: 10.3390/molecules26010160

Source DB:  PubMed          Journal:  Molecules        ISSN: 1420-3049            Impact factor:   4.411


  45 in total

1.  pH-dependent surface charging and points of zero charge. IV. Update and new approach.

Authors:  Marek Kosmulski
Journal:  J Colloid Interface Sci       Date:  2009-05-06       Impact factor: 8.128

Review 2.  QM/MM methods for biomolecular systems.

Authors:  Hans Martin Senn; Walter Thiel
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

3.  Nature of hydrogen bonding of water molecules in aqueous solutions of glycerol by attenuated total reflection (ATR) infrared spectroscopy.

Authors:  Yuki Kataoka; Norio Kitadai; Osamu Hisatomi; Satoru Nakashima
Journal:  Appl Spectrosc       Date:  2011-04       Impact factor: 2.388

4.  Surface loading effects on orthophosphate surface complexation at the goethite/water interface as examined by extended X-ray Absorption Fine Structure (EXAFS) spectroscopy.

Authors:  Dalton Belchior Abdala; Paul Andrew Northrup; Yuji Arai; Donald Lewis Sparks
Journal:  J Colloid Interface Sci       Date:  2014-09-30       Impact factor: 8.128

5.  Voronoi dipole moments for the simulation of bulk phase vibrational spectra.

Authors:  Martin Thomas; Martin Brehm; Barbara Kirchner
Journal:  Phys Chem Chem Phys       Date:  2014-12-18       Impact factor: 3.676

6.  Molecular level picture of the interplay between pH and phosphate binding at the goethite-water interface.

Authors:  Ashour A Ahmed; Stella Gypser; Dirk Freese; Peter Leinweber; Oliver Kühn
Journal:  Phys Chem Chem Phys       Date:  2020-11-25       Impact factor: 3.676

7.  Hydrogen-bonding effects on infrared spectra from anharmonic computations: uracil-water complexes and uracil dimers.

Authors:  Teresa Fornaro; Diletta Burini; Malgorzata Biczysko; Vincenzo Barone
Journal:  J Phys Chem A       Date:  2015-04-23       Impact factor: 2.781

8.  Phosphate adsorption on synthetic goethite and akaganeite.

Authors:  Ramesh Chitrakar; Satoko Tezuka; Akinari Sonoda; Kohji Sakane; Kenta Ooi; Takahiro Hirotsu
Journal:  J Colloid Interface Sci       Date:  2006-02-07       Impact factor: 8.128

9.  Structure and Bonding of Orthophosphate Ions at the Iron Oxide-Aqueous Interface.

Authors: 
Journal:  J Colloid Interface Sci       Date:  1996-01-15       Impact factor: 8.128

10.  Infrared spectroscopic characterization of phosphate binding at the goethite-water interface.

Authors:  Ashour A Ahmed; Stella Gypser; Peter Leinweber; Dirk Freese; Oliver Kühn
Journal:  Phys Chem Chem Phys       Date:  2019-02-20       Impact factor: 3.676

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