Literature DB >> 33396249

A Comprehensive Integrated Genetic Map of the Complete Karyotype of Solea senegalensis (Kaup 1858).

Manuel A Merlo1, Silvia Portela-Bens1, María E Rodríguez1, Aglaya García-Angulo1, Ismael Cross1, Alberto Arias-Pérez1, Emilio García1, Laureana Rebordinos1.   

Abstract

Solea senegalensis aquaculture production has experienced a great increase in the last decade and, consequently, the genome knowledge of the species is gaining attention. In this sense, obtaining a high-density genome mapping of the species could offer clues to the aquaculture improvement in those aspects not resolved so far. In the present article, a review and new processed data have allowed to obtain a high-density BAC-based cytogenetic map of S. senegalensis beside the analysis of the sequences of such BAC clones to achieve integrative data. A total of 93 BAC clones were used to localize the chromosome complement of the species and 588 genes were annotated, thus almost reaching the 2.5% of the S. senegalensis genome sequences. As a result, important data about its genome organization and evolution were obtained, such as the lesser gene density of the large metacentric pair compared with the other metacentric chromosomes, which supports the theory of a sex proto-chromosome pair. In addition, chromosomes with a high number of linked genes that are conserved, even in distant species, were detected. This kind of result widens the knowledge of this species' chromosome dynamics and evolution.

Entities:  

Keywords:  BAC-FISH; Solea senegalensis; comparative genomics; cytogenetic map; physical map

Mesh:

Substances:

Year:  2020        PMID: 33396249      PMCID: PMC7824234          DOI: 10.3390/genes12010049

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  47 in total

1.  Cytogenetic characterization of the sole Solea senegalensis (Teleostei: Pleuronectiformes: Soleidae): Ag-NOR, (GATA)n, (TTAGGG)n and ribosomal genes by one-color and two-color FISH.

Authors:  Ismael Cross; Alejandro Merlo; Manuel Manchado; Carlos Infante; José Pedro Cañavate; Laureana Rebordinos
Journal:  Genetica       Date:  2006 Sep-Nov       Impact factor: 1.082

2.  Circos: an information aesthetic for comparative genomics.

Authors:  Martin Krzywinski; Jacqueline Schein; Inanç Birol; Joseph Connors; Randy Gascoyne; Doug Horsman; Steven J Jones; Marco A Marra
Journal:  Genome Res       Date:  2009-06-18       Impact factor: 9.043

3.  Gene clusters related to metamorphosis in Solea senegalensis are highly conserved.

Authors:  Aglaya García-Angulo; Manuel A Merlo; Roger Iziga; María E Rodríguez; Silvia Portela-Bens; Ahmed Al-Rikabi; Thomas Liehr; Laureana Rebordinos
Journal:  Comp Biochem Physiol Part D Genomics Proteomics       Date:  2020-06-29       Impact factor: 2.674

4.  Analysis of the histone cluster in Senegalese sole (Solea senegalensis): evidence for a divergent evolution of two canonical histone clusters.

Authors:  Manuel Alejandro Merlo; Roger Iziga; Silvia Portela-Bens; Ismael Cross; Nadezda Kosyakova; Thomas Liehr; Manuel Manchado; Laureana Rebordinos
Journal:  Genome       Date:  2016-12-10       Impact factor: 2.166

5.  Clusters of co-expressed genes in mammalian genomes are conserved by natural selection.

Authors:  Gregory A C Singer; Andrew T Lloyd; Lukasz B Huminiecki; Kenneth H Wolfe
Journal:  Mol Biol Evol       Date:  2004-12-01       Impact factor: 16.240

6.  Construction of high-density genetic maps defined sex determination region of the Y chromosome in spinach.

Authors:  Li'ang Yu; Xiaokai Ma; Ban Deng; Jingjing Yue; Ray Ming
Journal:  Mol Genet Genomics       Date:  2020-09-21       Impact factor: 3.291

7.  Selection upon genome architecture: conservation of functional neighborhoods with changing genes.

Authors:  Fátima Al-Shahrour; Pablo Minguez; Tomás Marqués-Bonet; Elodie Gazave; Arcadi Navarro; Joaquín Dopazo
Journal:  PLoS Comput Biol       Date:  2010-10-07       Impact factor: 4.475

8.  Integrating cytogenetics and genomics in comparative evolutionary studies of cichlid fish.

Authors:  Juliana Mazzuchelli; Thomas David Kocher; Fengtang Yang; Cesar Martins
Journal:  BMC Genomics       Date:  2012-09-09       Impact factor: 3.969

9.  A dense genetic linkage map for common carp and its integration with a BAC-based physical map.

Authors:  Lan Zhao; Yan Zhang; Peifeng Ji; Xiaofeng Zhang; Zixia Zhao; Guangyuan Hou; Linhe Huo; Guiming Liu; Chao Li; Peng Xu; Xiaowen Sun
Journal:  PLoS One       Date:  2013-05-21       Impact factor: 3.240

10.  A second generation genetic map for rainbow trout (Oncorhynchus mykiss).

Authors:  Caird E Rexroad; Yniv Palti; Scott A Gahr; Roger L Vallejo
Journal:  BMC Genet       Date:  2008-11-19       Impact factor: 2.797

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  2 in total

1.  Integration of Maps Enables a Cytogenomics Analysis of the Complete Karyotype in Solea senegalensis.

Authors:  Daniel Ramírez; María Esther Rodríguez; Ismael Cross; Alberto Arias-Pérez; Manuel Alejandro Merlo; Marco Anaya; Silvia Portela-Bens; Paulino Martínez; Francisca Robles; Carmelo Ruiz-Rejón; Laureana Rebordinos
Journal:  Int J Mol Sci       Date:  2022-05-11       Impact factor: 6.208

2.  Fish Cytogenetics: Present and Future.

Authors:  Anna Rita Rossi
Journal:  Genes (Basel)       Date:  2021-06-28       Impact factor: 4.096

  2 in total

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