Literature DB >> 33392934

Description of Cohnella zeiphila sp. nov., a bacterium isolated from maize callus cultures.

Eric T Johnson1, Patrick F Dowd2, Christopher D Skory3, Christopher A Dunlap2.   

Abstract

A Gram-stain positive, aerobic, motile, rod-shaped bacterium designated as strain CBP-2801T was isolated as a contaminant from a culture containing maize callus in Peoria, Illinois, United States. The strain is unique relative to other Cohnella species due to its slow growth and reduced number of sole carbon sources. Phylogenetic analysis using 16S rRNA indicated that strain CBP-2801T is a Cohnella bacterium and showed the highest similarity to Cohnella xylanilytica (96.8%). Genome-based phylogeny and genomic comparisons based on average nucleotide identity confirmed the strain to be a novel species of Cohnella. Growth occurs at 15-45 °C (optimum 40 °C), pH 5-7 (optimum pH 6) and with 0-1% NaCl. The predominant fatty acids are anteiso-15:0 and 18:1 ω6c. Genome mining for secondary metabolites identified a putative biosynthetic cluster that encodes for a novel lasso peptide. In addition, this study contributes five new genome assemblies of type strains of Cohnella species, a genus with less than 30% of the type strains sequenced. The DNA G + C content is 58.7 mol %. Based on the phenotypic, phylogenetic and biochemical data strain CBP-2801T represents a novel species, for which the name Cohnella zeiphila sp. nov. is proposed. The type strain is CBP-2801T (= DSM 111598 = ATCC TSD-230).

Entities:  

Keywords:  Cohnella zeiphila; Paenibacillaceae; Taxonomy; Tissue culture; Zea mays

Year:  2021        PMID: 33392934     DOI: 10.1007/s10482-020-01495-2

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


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Journal:  Pest Manag Sci       Date:  2019-05-15       Impact factor: 4.845

2.  Phylogenomic analysis of the Brevibacillus brevis clade: a proposal for three new Brevibacillus species, Brevibacillus fortis sp. nov., Brevibacillus porteri sp. nov. and Brevibacillus schisleri sp. nov.

Authors:  Eric T Johnson; Christopher A Dunlap
Journal:  Antonie Van Leeuwenhoek       Date:  2019-01-29       Impact factor: 2.271

3.  The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

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Journal:  Nucleic Acids Res       Date:  2013-11-29       Impact factor: 16.971

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