| Literature DB >> 33391791 |
Steven J Phipps1, R Quentin Grafton2, Tom Kompas3.
Abstract
Differences in COVID-19 testing and tracing across countries, as well as changes in testing within each country over time, make it difficult to estimate the true (population) infection rate based on the confirmed number of cases obtained through RNA viral testing. We applied a backcasting approach to estimate a distribution for the true (population) cumulative number of infections (infected and recovered) for 15 developed countries. Our sample comprised countries with similar levels of medical care and with populations that have similar age distributions. Monte Carlo methods were used to robustly sample parameter uncertainty. We found a strong and statistically significant negative relationship between the proportion of the population who test positive and the implied true detection rate. Despite an overall improvement in detection rates as the pandemic has progressed, our estimates showed that, as at 31 August 2020, the true number of people to have been infected across our sample of 15 countries was 6.2 (95% CI: 4.3-10.9) times greater than the reported number of cases. In individual countries, the true number of cases exceeded the reported figure by factors that range from 2.6 (95% CI: 1.8-4.5) for South Korea to 17.5 (95% CI: 12.2-30.7) for Italy.Entities:
Keywords: COVID-19; SARS-CoV-2; infection rate; parameter uncertainty
Year: 2020 PMID: 33391791 PMCID: PMC7735365 DOI: 10.1098/rsos.200909
Source DB: PubMed Journal: R Soc Open Sci ISSN: 2054-5703 Impact factor: 2.963
The three parameters used in the backcasting exercise: name, units, and the minimum and maximum values of the uncertainty ranges sampled.
| parameter | units | minimum | maximum |
|---|---|---|---|
| infection fatality rate (IFR) | % | 0.37 | 1.15 |
| mean incubation period | days | 4.1 | 7.0 |
| mean time from symptoms to death | days | 12.8 | 19.2 |
Figure 1.The cumulative number of COVID-19 infections for each country: the number of detected infections (blue) and the estimated true number of infections (red). For the true number, the median estimate and the 95% confidence interval are indicated by a solid line and shading respectively. The data shown for each country begins on the day that the number of detected infections first reached or exceeded 100.
Figure 2.The implied detection rate for each country: the median estimate (solid line) and the 95% confidence interval (shading). The data shown for each country begins on the day that the number of detected infections first reached or exceeded 100.
Statistics for each country as at 28 March 2020 and 31 August 2020: the estimated true cumulative number of infections (median and 95% confidence interval); the estimated cumulative percentage of the population to be infected (median and 95% confidence interval); the confirmed percentage of the population to have tested positive; and the implied detection rate (median and 95% confidence interval). For 28 March 2020, the estimated true cumulative number of infections according to Flaxman et al. [5] (mean and 95% credible interval) is also provided for comparison. The data shown for ‘all’ represents aggregated statistics for all 15 countries. Population statistics are obtained from the European Centre for Disease Prevention and Control.
| country | population (millions) | 28 March 2020 | 31 August 2020 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| estimated cumulative infections (thousands) | % population infected | implied detection rate (%) | estimated cumulative infections (thousands) | % population infected | implied detection rate (%) | |||||
| this study | Flaxman | confirmed | this study | confirmed | ||||||
| Australia | 25.203 | 9 (6–15) | 0.03 (0.02–0.06) | — | 0.01 | 38.7 (22.0–56.0) | 120 (83–211) | 0.48 (0.33–0.84) | 0.10 | 21.4 (12.2–30.8) |
| Austria | 8.859 | 55 (38–96) | 0.62 (0.42–1.09) | 1.1 (0.36–3.1) | 0.09 | 14.1 (8.0–20.5) | 101 (71–178) | 1.14 (0.80–2.01) | 0.31 | 26.9 (15.3–38.6) |
| Belgium | 11.456 | 736 (504–1301) | 6.43 (4.40–11.35) | 3.7 (1.3–9.7) | 0.11 | 1.6 (0.9–2.4) | 1307 (911–2293) | 11.41 (7.95–20.01) | 0.75 | 6.5 (3.7–9.4) |
| Canada | 37.411 | 201 (125–365) | 0.54 (0.33–0.98) | — | 0.01 | 2.3 (1.3–3.7) | 1209 (843–2121) | 3.23 (2.25–5.67) | 0.34 | 10.6 (6.0–15.2) |
| Denmark | 5.806 | 43 (30–76) | 0.74 (0.51–1.31) | 1.1 (0.40–3.1) | 0.04 | 4.7 (2.7–6.9) | 83 (58–146) | 1.43 (1.00–2.51) | 0.29 | 20.1 (11.5–28.9) |
| France | 67.013 | 2315 (1588–4087) | 3.45 (2.37–6.10) | 3.0 (1.1–7.4) | 0.05 | 1.4 (0.8–2.1) | 4087 (2849–7167) | 6.10 (4.25–10.69) | 0.41 | 6.8 (3.9–9.8) |
| Germany | 83.091 | 529 (355–935) | 0.64 (0.43–1.13) | 0.72 (0.28–1.8) | 0.06 | 9.2 (5.2–13.7) | 1232 (859–2161) | 1.48 (1.03–2.60) | 0.29 | 19.7 (11.2–28.2) |
| Italy | 60.360 | 2949 (2048–5190) | 4.89 (3.39–8.60) | 9.8 (3.2–26) | 0.14 | 2.9 (1.7–4.2) | 4688 (3269–8226) | 7.77 (5.42–13.63) | 0.44 | 5.7 (3.3–8.2) |
| Norway | 5.328 | 18 (12–32) | 0.34 (0.23–0.60) | 0.41 (0.09–1.2) | 0.07 | 19.8 (11.2–29.2) | 35 (24–61) | 0.66 (0.46–1.15) | 0.20 | 30.2 (17.2–43.3) |
| South Korea | 51.225 | 30 (21–52) | 0.06 (0.04–0.10) | — | 0.02 | 31.8 (18.1–45.7) | 51 (36–90) | 0.10 (0.07–0.17) | 0.04 | 39.1 (22.3–56.2) |
| Spain | 46.937 | 2548 (1768–4480) | 5.43 (3.77–9.54) | 15 (3.7–41) | 0.18 | 3.3 (1.9–4.7) | 3963 (2763–6956) | 8.44 (5.89–14.82) | 0.99 | 11.7 (6.7–16.8) |
| Sweden | 10.230 | 242 (163–428) | 2.36 (1.59–4.18) | 3.1 (0.85–8.4) | 0.03 | 1.4 (0.8–2.1) | 769 (536–1350) | 7.52 (5.24–13.19) | 0.82 | 11.0 (6.2–15.7) |
| Switzerland | 8.545 | 136 (93–239) | 1.59 (1.09–2.80) | 3.2 (1.3–7.6) | 0.14 | 8.9 (5.1–13.0) | 231 (161–406) | 2.71 (1.89–4.75) | 0.49 | 18.1 (10.3–26.0) |
| UK | 66.647 | 2212 (1485–3912) | 3.32 (2.23–5.87) | 2.7 (1.2–5.4) | 0.03 | 0.9 (0.5–1.4) | 5479 (3820–9614) | 8.23 (5.73–14.43) | 0.50 | 6.1 (3.5–8.8) |
| USA | 329.065 | 4737 (3121–8456) | 1.44 (0.95–2.57) | — | 0.03 | 2.2 (1.2–3.4) | 26 355 (18 387–46 319) | 8.01 (5.59–14.08) | 1.82 | 22.8 (12.9–32.6) |
| all | 817.104 | 16 758 (11 355–29 664) | 2.05 (1.39–3.63) | — | 0.05 | 2.6 (1.5–3.8) | 49 710 (34 669–87 297) | 6.08 (4.24–10.68) | 0.98 | 16.1 (9.2–23.1) |
Figure 3.The implied true detection rate for each country versus the number of tests per 1000 people: (a) 30 April 2020, and (b) 31 August 2020. Symbols indicate the median estimates and vertical bars indicate the 95% confidence intervals. Owing to a lack of available data, values for France and Sweden are not shown in (b). Note that the horizontal scale is different for each panel.
Figure 4.The implied true detection rate for each country versus the fraction of tests to return a positive result: (a) 30 April 2020, and (b) 31 August 2020. Symbols indicate the median estimates and vertical bars indicate the 95% confidence intervals. Owing to a lack of available data, values for France and Sweden are not shown in (b). Note that the horizontal scale is different for each panel.
A comparison of published seroprevalence studies with our estimated true cumulative infection rates: the study, the country where the samples were collected, the region where the samples were collected, the dates when the samples were collected, the reported rate of seroprevalence (best estimate and 95% confidence interval), and the estimated true cumulative infection rate according to this study (median and 95% confidence interval).
| study | country | location | dates | seroprevalence (%) | this study (%) |
|---|---|---|---|---|---|
| Havers | USA | Western Washington State | 23 March–1 April 2020 | 1.1 (0.7–1.9) | 1.40 (0.86–2.36) |
| New York City metro area | 23 March–1 April 2020 | 6.9 (5.0–8.9) | 1.40 (0.86–2.36) | ||
| Louisiana | 1–8 April 2020 | 5.8 (3.9–8.2) | 2.07 (1.41–3.66) | ||
| South Florida | 6–10 April 2020 | 1.9 (1.0–3.2) | 2.35 (1.61–4.14) | ||
| Philadelphia metro area | 13–25 April 2020 | 3.2 (1.7–5.2) | 3.09 (2.15–5.44) | ||
| Missouri | 20–26 April 2020 | 2.7 (1.7–3.9) | 3.34 (2.32–5.88) | ||
| Utah | 20 April–3 May 2020 | 2.2 (1.2–3.4) | 3.52 (2.45–6.19) | ||
| San Francisco Bay area | 23–27 April 2020 | 1.0 (0.3–2.4) | 3.45 (2.40–6.07) | ||
| Connecticut | 26 April–3 May 2020 | 4.9 (3.6–6.5) | 3.68 (2.56–6.47) | ||
| Minneapolis–St Paul–St Cloud metro area | 30 April–12 May 2020 | 2.4 (1.0–4.5) | 3.97 (2.76–6.97) | ||
| Bendavid | USA | Santa Clara County, California | 3–4 April 2020 | 2.8 (1.3–4.7)a | 1.99 (1.35–3.52) |
| Pollán | Spain | nationwide | 27 April–11 May 2020 | 6.2 (5.8–6.6)b | 7.68 (5.35–13.48) |
| Hicks | Australia | nationwide | May–June 2020 | 0.28 (0.00–0.71) | 0.06 (0.04–0.10)c |
aWeighted by the authors for the population demographics of Santa Clara County.
bEither point-of-care test or immunoassay positive.
cStatistics are calculated for the period 1 May–30 June 2020.