Literature DB >> 33388834

tRNA-derived fragments (tRFs): establishing their turf in post-transcriptional gene regulation.

Srikar Krishna1,2, Srikala Raghavan3, Ramanuj DasGupta4, Dasaradhi Palakodeti5.   

Abstract

Transfer RNA (tRNA)-derived fragments (tRFs) are an emerging class of conserved small non-coding RNAs that play important roles in post-transcriptional gene regulation. High-throughput sequencing of multiple biological samples have identified heterogeneous species of tRFs with distinct functionalities. These small RNAs have garnered a lot of scientific attention due to their ubiquitous expression and versatility in regulating various biological processes. In this review, we highlight our current understanding of tRF biogenesis and their regulatory functions. We summarize the diverse modes of biogenesis through which tRFs are generated and discuss the mechanism through which different tRF species regulate gene expression and the biological implications. Finally, we conceptualize research areas that require focus to strengthen our understanding of the biogenesis and function of tRFs.

Keywords:  Non-coding RNAs; Post-transcriptional regulation; Small RNAs; tRFs; tRNA-derived fragments; tsRNA

Mesh:

Substances:

Year:  2021        PMID: 33388834     DOI: 10.1007/s00018-020-03720-7

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  53 in total

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2.  Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm.

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Journal:  Dev Cell       Date:  2018-07-26       Impact factor: 12.270

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Journal:  J Biol Chem       Date:  2019-11-15       Impact factor: 5.157

4.  A cytotoxic ribonuclease which specifically cleaves four isoaccepting arginine tRNAs at their anticodon loops.

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5.  Attacking cancer at its root.

Authors:  Craig B Thompson
Journal:  Cell       Date:  2009-09-18       Impact factor: 41.582

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Authors:  J Speer; C W Gehrke; K C Kuo; T P Waalkes; E Borek
Journal:  Cancer       Date:  1979-12       Impact factor: 6.860

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Authors:  Henrik Devitt Møller; Lin Lin; Xi Xiang; Trine Skov Petersen; Jinrong Huang; Luhan Yang; Eigil Kjeldsen; Uffe Birk Jensen; Xiuqing Zhang; Xin Liu; Xun Xu; Jian Wang; Huanming Yang; George M Church; Lars Bolund; Birgitte Regenberg; Yonglun Luo
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

10.  Dynamic expression of tRNA-derived small RNAs define cellular states.

Authors:  Srikar Krishna; Daniel Gr Yim; Vairavan Lakshmanan; Varsha Tirumalai; Judice Ly Koh; Jung Eun Park; Jit Kong Cheong; Joo Leng Low; Michelle Js Lim; Siu Kwan Sze; Padubidri Shivaprasad; Akash Gulyani; Srikala Raghavan; Dasaradhi Palakodeti; Ramanuj DasGupta
Journal:  EMBO Rep       Date:  2019-06-12       Impact factor: 8.807

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  17 in total

1.  AS-tDR-007872: A Novel tRNA-Derived Small RNA Acts an Important Role in Non-Small-Cell Lung Cancer.

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2.  MicroRNAs and other small RNAs in Aedes aegypti saliva and salivary glands following chikungunya virus infection.

Authors:  Carmine Fiorillo; Pei-Shi Yen; Alessio Colantoni; Marina Mariconti; Nayara Azevedo; Fabrizio Lombardo; Anna-Bella Failloux; Bruno Arcà
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3.  Low-bias ncRNA libraries using ordered two-template relay: Serial template jumping by a modified retroelement reverse transcriptase.

Authors:  Heather E Upton; Lucas Ferguson; Morayma M Temoche-Diaz; Xiao-Man Liu; Sydney C Pimentel; Nicholas T Ingolia; Randy Schekman; Kathleen Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-19       Impact factor: 11.205

4.  Identification of host tRNAs preferentially recognized by the Plasmodium surface protein tRip.

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Review 5.  Research progress on the tsRNA classification, function, and application in gynecological malignant tumors.

Authors:  Jing-Tao Wen; Zheng-Hao Huang; Qian-Hui Li; Xi Chen; Hong-Lei Qin; Yang Zhao
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6.  Elucidating the Role of Serum tRF-31-U5YKFN8DYDZDD as a Novel Diagnostic Biomarker in Gastric Cancer (GC).

Authors:  Yuejiao Huang; Haiyan Zhang; Xinliang Gu; Shiyi Qin; Ming Zheng; Xiangrong Shi; Chunlei Peng; Shaoqing Ju
Journal:  Front Oncol       Date:  2021-08-23       Impact factor: 6.244

7.  Characteristics of Transfer RNA-Derived Fragments Expressed during Human Renal Cell Development: The Role of Dicer in tRF Biogenesis.

Authors:  Marek Kazimierczyk; Marta Wojnicka; Ewa Biała; Paulina Żydowicz-Machtel; Barbara Imiołczyk; Tomasz Ostrowski; Anna Kurzyńska-Kokorniak; Jan Wrzesinski
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8.  Transfer RNA-Derived Fragments and isomiRs Are Novel Components of Chronic TBI-Induced Neuropathology.

Authors:  Noora Puhakka; Shalini Das Gupta; Niina Vuokila; Asla Pitkänen
Journal:  Biomedicines       Date:  2022-01-08

9.  Plasma tRNA-derived small RNAs signature as a predictive and prognostic biomarker in lung adenocarcinoma.

Authors:  Jun Wang; Xianyu Liu; Weifang Cui; Qun Xie; Wei Peng; Heng Zhang; Yang Gao; Chunfang Zhang; Chaojun Duan
Journal:  Cancer Cell Int       Date:  2022-02-03       Impact factor: 5.722

10.  tRNA Derivatives in Multiple Myeloma: Investigation of the Potential Value of a tRNA-Derived Molecular Signature.

Authors:  Paraskevi Karousi; Aristea-Maria Papanota; Pinelopi I Artemaki; Christine-Ivy Liacos; Dimitrios Patseas; Nefeli Mavrianou-Koutsoukou; Aikaterini-Anna Liosi; Maria-Anna Kalioraki; Ioannis Ntanasis-Stathopoulos; Maria Gavriatopoulou; Efstathios Kastritis; Meletios-Athanasios Dimopoulos; Andreas Scorilas; Evangelos Terpos; Christos K Kontos
Journal:  Biomedicines       Date:  2021-12-01
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