Literature DB >> 33386091

Molecular property prediction: recent trends in the era of artificial intelligence.

Jie Shen1, Christos A Nicolaou2.   

Abstract

Artificial intelligence (AI) has become a powerful tool in many fields, including drug discovery. Among various AI applications, molecular property prediction can have more significant immediate impact to the drug discovery process since most algorithms and methods use predicted properties to evaluate, select, and generate molecules. Herein, we provide a brief review of the state-of-art molecular property prediction methodologies and discuss examples reported recently. We highlight key techniques that have been applied to molecular property prediction such as learned representation, multi-task learning, transfer learning, and federated learning. We also point out some critical but less discussed issues such as data set quality, benchmark, model performance evaluation, and prediction confidence quantification.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Year:  2020        PMID: 33386091     DOI: 10.1016/j.ddtec.2020.05.001

Source DB:  PubMed          Journal:  Drug Discov Today Technol        ISSN: 1740-6749


  6 in total

1.  Machine learning enabled identification of potential SARS-CoV-2 3CLpro inhibitors based on fixed molecular fingerprints and Graph-CNN neural representations.

Authors:  Jacek Haneczok; Marcin Delijewski
Journal:  J Biomed Inform       Date:  2021-05-28       Impact factor: 8.000

Review 2.  Artificial intelligence in drug discovery: what is realistic, what are illusions? Part 2: a discussion of chemical and biological data.

Authors:  Andreas Bender; Isidro Cortes-Ciriano
Journal:  Drug Discov Today       Date:  2021-01-27       Impact factor: 7.851

3.  A Novel Molecular Representation Learning for Molecular Property Prediction with a Multiple SMILES-Based Augmentation.

Authors:  Chunyan Li; Jihua Feng; Shihu Liu; Junfeng Yao
Journal:  Comput Intell Neurosci       Date:  2022-01-28

4.  In silico proof of principle of machine learning-based antibody design at unconstrained scale.

Authors:  Rahmad Akbar; Philippe A Robert; Cédric R Weber; Michael Widrich; Robert Frank; Milena Pavlović; Lonneke Scheffer; Maria Chernigovskaya; Igor Snapkov; Andrei Slabodkin; Brij Bhushan Mehta; Enkelejda Miho; Fridtjof Lund-Johansen; Jan Terje Andersen; Sepp Hochreiter; Ingrid Hobæk Haff; Günter Klambauer; Geir Kjetil Sandve; Victor Greiff
Journal:  MAbs       Date:  2022 Jan-Dec       Impact factor: 5.857

5.  Describe Molecules by a Heterogeneous Graph Neural Network with Transformer-like Attention for Supervised Property Predictions.

Authors:  Daiguo Deng; Zengrong Lei; Xiaobin Hong; Ruochi Zhang; Fengfeng Zhou
Journal:  ACS Omega       Date:  2022-01-21

6.  Integrating concept of pharmacophore with graph neural networks for chemical property prediction and interpretation.

Authors:  Yue Kong; Xiaoman Zhao; Ruizi Liu; Zhenwu Yang; Hongyan Yin; Bowen Zhao; Jinling Wang; Bingjie Qin; Aixia Yan
Journal:  J Cheminform       Date:  2022-08-04       Impact factor: 8.489

  6 in total

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