| Literature DB >> 33377009 |
Andrew D Hildreth1,2, Luke Riggan1,2, Timothy E O'Sullivan1,2.
Abstract
CRISPR-Cas9 genome engineering can be used to functionally investigate the complex mechanisms of immune system regulation. Decades of work have aimed to genetically reprogram innate immunity, but current approaches are inefficient or nonspecific, limiting their use. Here, we detail an optimized strategy for non-viral CRISPR-Cas9 ribonucleoprotein (cRNP) genomic editing of primary innate lymphocytes (ILCs) and myeloid lineage cells, resulting in high-efficiency editing of target gene expression from a single electroporation. For complete details on the use and execution of this protocol, please refer to Riggan et al. (2020).Entities:
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Year: 2020 PMID: 33377009 PMCID: PMC7756923 DOI: 10.1016/j.xpro.2020.100113
Source DB: PubMed Journal: STAR Protoc ISSN: 2666-1667
Figure 1Analysis of Isolated NK Cell and BM-cDC1 Phenotypes
(A) Representative gating strategy for the identification of purified splenic NK cells.
(B) Representative gating strategy and phenotypic analysis of BM-cDC1.
Culture Conditions for IL-15-Activated NK Cells
| Number of Spleens | Purified Cell Number | Well Plate | Media Volume (mL) |
|---|---|---|---|
| 1 | 5 × 105-1 × 106 | 48 | 1 |
| 2 | 1 × 106–2 × 106 | 24 | 2 |
| 3–6 | 2 × 106–4 × 106 | 12 | 4 |
| 6–8 | 4 × 106–6 × 106 | 6 | 6 |
Figure 2Flow Cytometry Analysis of cRNP-Edited Innate Leukocytes
(A and B) 1 × 106 cDC1 or macrophages were electroporated at 1,900 V with 1× 20 ms pulse in the presence of Itgax (CD11c) or Itgam (CD11b) cRNP complex, respectively.
(A) CD11c expression in BM-cDC1 6 days after electroporation compared to controls electroporated in the presence of Cas9 protein alone.
(B) CD11b expression in BMDM 4 days after electroporation compared to controls electroporated in the presence of Cas9 protein alone.
(C and D) Group 1 ILCs were electroporated at 1,900 V with 1× 20 ms pulse in the presence of Klrb1c (NK1.1) cRNP complex.
(C) NK1.1 expression 3 days after electroporation of 5 × 105 rmIL-15 pre-activated purified splenic NK cells compared to controls electroporated in the presence of Cas9 protein alone.
(D) NK1.1 expression 3 days after electroporation of 2.5 × 105 rmIL-15 pre-activated purified liver ILC1 (TCRβ−CD3ϵ−NK1.1+CD49b−CD200r+) compared to controls electroporated in the presence of Cas9 protein alone. Data are representative of 3 independent experiments of 3 mice per group.
Figure 3Analysis of Editing Efficiency of cRNP-Edited Innate Leukocytes Using Sanger Sequencing and ICE Analysis
(A–C) SYNTHEGO ICE analysis on Sanger sequencing results from PCR region surrounding the Klrb1c locus 3 days after electroporation of 5 × 105 rmIL-15 pre-activated purified splenic NK cells.
(A) Alignment plot showing control (orange) and edited (green) sequences.
(B) Indel plot displaying the predicted range of insertions and deletions in the edited gene locus.
(C) Traces from control and edited DNA files. The guide sequence is underlined in black, PAM sequence in red, and expected cut site in vertical dashed line.
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Anti-Mouse NK1.1 | BioLegend | PK136 Cat# 108727 |
| Anti-Mouse CD3e | BioLegend | 17A2 Cat# 100222 |
| Anti-Mouse CD11b | BioLegend | M1/70 Cat# 101222 |
| Anti-Mouse CD19 | BioLegend | 6D5 Cat# 115530 |
| Anti-Mouse CD49b/DX5 | BioLegend | DX5 Cat# 103517 |
| Anti-Mouse KLRG1 | BioLegend | 2F1 Cat# 138416 |
| Anti-Mouse CD45.2 | BioLegend | 104 Cat# 109821 |
| Anti-Mouse TCRβ | BioLegend | H57-597 Cat# 109220 |
| Anti-Mouse CD200r1 | BioLegend | OX-110 Cat# 123915 |
| Anti-Mouse CD11c | BioLegend | N418 Cat# 117318 |
| Anti-Mouse XCR1 | BioLegend | ZET Cat# 148204 |
| Anti-Mouse MHCII | BioLegend | M5/114.15.2 Cat# 107625 |
| Anti-Mouse CD64 | BioLegend | X54-5/7.1 Cat# 139306 |
| Anti-Cas9 | Cell Signaling Technology | 7A9-3A3 Cat# 35193 |
| Cas9-NLS | SYNTHEGO | N/A |
| Cas9-NLS | qb3 UC Berkley | N/A |
| Alt-R® Cas9 Electroporation Enhancer, 10 nmol | IDT | Cat# 1075916 |
| Synthetic Guide RNAs | SYNTHEGO | N/A |
| Recombinant mFLT3-L | Peprotech | Cat# 250-31L |
| Recombinant mGM-CSF | Peprotech | Cat# 315-03 |
| Recombinant mM-CSF | Peprotech | Cat# 315-02 |
| Recombinant mIL-15 | Peprotech | Cat# 210-15 |
| RPMI Medium 1640 (Plus L-Glutamine, Plus 25 mM HEPES) | Gibco | Cat# 22400-089 |
| DMEM (1×) (Plus 4.5 g/L D-Glucose) | Gibco | Cat# 11960-044 |
| Heat-Inactivated Fetal Bovine Serum | Gibco | Cat# F4135 |
| L-Glutamine 200 mM (100×) | Gibco | Cat# 25030-081 |
| Sodium Pyruvate (100 mM) | Gibco | Cat# 11360-070 |
| MEM-NEAA (100×) | Gibco | Cat# 11140-050 |
| Penicillin-Streptomycin (100×) | Gibco | Cat# 10378-016 |
| 2-mercaptoethanol (55 mM) | ThermoFisher | Cat# 21985023 |
| Percoll | VWR | Cat# 17-0891-02 |
| 10× HBSS | Gibco | Cat# 14185052 |
| DNeasy Blood & Tissue Kit | QIAGEN | Cat# 69504 |
| EasySep™ Mouse NK Cell Isolation Kit | Stem Cell | Cat# 19855 |
| EasySep™ Buffer | Stem Cell | Cat# 20104 |
| Mouse: C57BL/6 (CD45.2) | Jackson Lab | Stock # 000664 |
| Mouse: B6.SJL (CD45.1) | Jackson Lab | Stock # 002114 |
| sgRNA targeting sequence: CD11c #1 AAGAGCTCTCACCAACAGCC | sgItgax_9 | |
| sgRNA targeting sequence: CD11b #1 AGTGTGACTACAGCACAAGC | sgItgam_3 | |
| sgRNA targeting sequence: NK1.1 #2 GAGGAAGGTCAAGCTGACTG | sgKlrb1c_2 | |
| FlowJo, Version 9.9.6 | Ashland, OR: Becton, Dickinson and Company | |
| Prism | GraphPad | |
| ICE Analysis | SYNTHEGO | |
| Neon Transfection System | ThermoFisher | Cat# MPK5000 |
| Neon 100μL Transfection Kit | ThermoFisher | Cat# MPK10096 |
| Dounce Homogenizer | Corning | Cat# 1234F37 |
| Porcelain Mortar | FisherScientific | Cat# FB961A |
| Porcelain Pestle | FisherScientific | Cat# FB961K |
| 100μm Nitex mesh | FisherScientific | Cat# NC0486649 |
| FACS tubes | Falcon | Cat# 38007 |
| Falcon Round Bottom Tubes, 14 mL | FisherScientific | Cat# 50-197-4781 |
| EasyEights™ EasySep™ Magnet | Stem Cell | Cat# 18103 |
| Greiner Cell Scrapers | Sigma Aldrich | Cat# C5981-100ea |
| Microscope Slides | VWR | Cat# 89085-399 |
| NanoDrop OneC Microvolume UV-Vis Spectrophotometer | ThermoFisher | Cat# ND-ONE-W |
| Reagent: CR-10 | Final Concentration | Volume (mL) |
|---|---|---|
| RPMI Medium 1640 | n/a | 427 |
| HEPES | 25 mM | n/a |
| Heat-Inactivated Fetal Bovine Serum | 10% | 50 |
| L-Glutamine | 1% | 5 |
| Sodium Pyruvate (200 mM) | 1% | 5 |
| MEM-NEAA | 1% | 5 |
| Penicillin-Streptomycin | 1% | 5 |
| Sodium Bicarbonate | 0.5% | 2.5 |
| 2-mercaptoethanol (55 mM) | 0.01% | 0.5 |
| Total | n/a | 500 |