| Literature DB >> 33376744 |
Saida Lhousni1, Karam Yahya Belmokhtar1, Ihab Belmokhtar1, Mounia Elidrissi Errahhali1, Manal Elidrissi Errahhali1, Redouane Boulouiz1,2, Mariam Tajir3, Majida Charif4, Khawla Zerrouki3, Noufissa Benajiba5, Maria Rkain5, Abdeladim Babakhouya5, Hatim Kouismi6, Afaf Thouil6, Hanane Latrach7, Rim Amrani8, Sahar Messaoudi8, Anass Ayyad8, Zaina Sidqi9, Khalid Andaloussi Serraj10, Siham Hamaz10, Habiba Alaoui10, Houda Bachir10, Yassamine Bentata11, Intissar Haddiya11, Mohammed Choukri12, Rachid Seddik1,13, Amal Bennani14, Siham Dikhaye15, Bouchra Oneib16, Fatima Elghazouani16, Omar El Mahi17, Adnane Benzirar17, Ayat Allah Oufkir18, Brahim Housni19, Ahmed Mimouni20, Hanane Saadi20, Mohammed Belahcen21, Tijani El Harroudi22, Meryem Ouarzane1,23, Mohammed Bellaoui1.
Abstract
BACKGROUND: Biobanks are highly organized infrastructures that allow the storage of human biological specimens associated with donors' personal and clinical data. These infrastructures play a key role in the development of translational medical research. In this context, we launched, in November 2015, the first biobank in Morocco (BRO Biobank) in order to promote biomedical research and provide opportunities to include Moroccan and North African ethnic groups in international biomedical studies. Here, we present the setup and the sample characteristics of BRO Biobank.Entities:
Mesh:
Year: 2020 PMID: 33376744 PMCID: PMC7738781 DOI: 10.1155/2020/8812609
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
List of primer sequences used for PCR analysis of the β-globin gene.
| Primer name | Sequence (5′⟶3′) | Size of the PCRproduct in bp |
|---|---|---|
| GH20 | GAAGAGCCAAGGACAGGTAC | 268 |
| PC04 | CAACTTCATCCACGTTCACC | |
| RS42 | GCTCACTCAGTGTGGCAAAG | 536 |
| KM29 | GGTTGGCCAATCTACTCCCAGG | |
| RS40 | ATTTTCCCACCCTTAGGCTG | 989 |
| RS80 | TGGTAGCTGGATTGTAGCTG | |
| KM29 | GGTTGGCCAATCTACTCCCAGG | 1327 |
| RS80 | TGGTAGCTGGATTGTAGCTG |
Figure 1Schematic representation of Eastern Morocco region adapted from “Morocco Map Location” and “Regional Map of Morocco” [33, 34]. The distribution of healthy participants enrolled in the BRO Biobank by region of Eastern Morocco is shown.
Figure 2Distribution of biospecimens collected from healthy participants and banked in the BRO Biobank.
Characteristics of patients enrolled in the BRO Biobank.
| Patients' personal information |
|
|---|---|
| Gender ( | |
| Female | 173 (40%) |
| Male | 260 (60%) |
|
| |
| Age | |
| Median | 11 years |
| Range | 1 day–83 years |
|
| |
| Consanguinity ( | |
| Yes | 130 (47%) |
| No | 144 (53%) |
|
| |
| Degree of consanguinity ( | |
| 1st degree | 89 (68%) |
| 2ed degree | 26 (20%) |
| 3rd degree | 15 (12%) |
|
| |
| Family history of genetic diseases ( | |
| Yes | 98 (36%) |
| No | 175 (64%) |
|
| |
| Purpose of enrollment ( | |
| Diagnosis and research | 268 (62%) |
| Research only | 165 (38%) |
Figure 3Distribution of biospecimens collected from healthy participants and banked in the BRO Biobank.
Distribution of patients enrolled in the BRO Biobank by disease type.
| Disease type |
|
|---|---|
| Rare diseases | 241 (56%) |
| Hemoglobinopathy | 48 (11%) |
| Intellectual disability | 47 (11%) |
| Disorders of sex differentiation | 32 (7%) |
| Myopathy | 30 (7%) |
| Multiple endocrine neoplasia | 16 (4%) |
| Genodermatosis | 11 (3%) |
| Metabolic disease | 9 (2%) |
| Autism spectrum disorders | 6 (1%) |
| SMA | 5 (1%) |
| Others | 37 (9%) |
| Lung cancer | 56 (13%) |
| Hematological neoplasms | 16 (4%) |
| Kidney transplantation | 13 (3%) |
| Unknown diagnosis | 107 (25%) |
Figure 4Distribution of collected biospecimens from patients banked by the BRO Biobank.
Quality assessment of some DNA and RNA samples of the BRO Biobank after at least 2 years of storage using NanoDrop spectrophotometry.
| Samples | D1 | D2 | D3 | R1 | R2 | R3 |
|---|---|---|---|---|---|---|
| Concentration (ng/ | 145.8 | 51 | 318.7 | 246.9 | 266 | 261.4 |
| OD260/OD280 | 1.91 | 1.99 | 1.96 | 1.8 | 1.8 | 1.8 |
D1, D2, and D3: DNA samples; R1, R2, and R3: RNA samples.
Figure 5Quality assessment of DNA samples of the BRO Biobank after at least 2 years of storage: (a) 0.8% agarose gel electrophoresis of stored DNA samples; (b) 0.8% agarose gel electrophoresis of DNA samples digested with HindIII enzyme; (c) 1.2% agarose gel electrophoresis of PCR amplification of four regions of the β-globin gene using DNA samples of the BRO Biobank as templates. M: molecular weight marker (0.1–10 kb); D1, D2, and D3: DNA samples; ND: nondigested DNA; P1, P2, P3, and P4: regions of the β-globin gene amplified by PCR.
Figure 6Quality assessment of RNA samples of the BRO Biobank after at least 2 years of storage: (a) 1.5% nondenaturing agarose gel electrophoresis of RNA samples; (b) 2.5% agarose gel electrophoresis of RT-PCR amplification of a region of GAPDH gene using RNA samples of the BRO Biobank as templates. M: molecular weight marker (0.1–10 kb); R1, R2, and R3: RNA samples.