Literature DB >> 33376238

Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster.

Adamandia Kapopoulou1, Martin Kapun2,3,4, Bjorn Pieper5, Pavlos Pavlidis6, Ricardo Wilches7, Pablo Duchen8, Wolfgang Stephan9, Stefan Laurent10.   

Abstract

European and African natural populations of Drosophila melanogaster have been the focus of several studies aiming at inferring demographic and adaptive processes based on genetic variation data. However, in these analyses little attention has been given to gene flow between African and European samples. Here we present a dataset consisting of 14 fully sequenced haploid genomes sampled from a natural population from the northern species range (Umeå, Sweden). We co-analyzed this new data with an African population to compare the likelihood of several competing demographic scenarios for European and African populations and show that gene flow improves the fit of demographic models to data.

Entities:  

Mesh:

Year:  2020        PMID: 33376238      PMCID: PMC7772335          DOI: 10.1038/s41598-020-79720-1

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  42 in total

1.  Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations.

Authors:  Pavlos Pavlidis; Jeffrey D Jensen; Wolfgang Stephan
Journal:  Genetics       Date:  2010-04-20       Impact factor: 4.562

2.  The mutational load with epistatic gene interactions in fitness.

Authors:  M Kimura; T Maruyama
Journal:  Genetics       Date:  1966-12       Impact factor: 4.562

3.  Estimating the Timing of Multiple Admixture Pulses During Local Ancestry Inference.

Authors:  Paloma Medina; Bryan Thornlow; Rasmus Nielsen; Russell Corbett-Detig
Journal:  Genetics       Date:  2018-09-11       Impact factor: 4.562

4.  Demographic inference reveals African and European admixture in the North American Drosophila melanogaster population.

Authors:  Pablo Duchen; Daniel Zivkovic; Stephan Hutter; Wolfgang Stephan; Stefan Laurent
Journal:  Genetics       Date:  2012-11-12       Impact factor: 4.562

5.  Publisher Correction: Inferring whole-genome histories in large population datasets.

Authors:  Jerome Kelleher; Yan Wong; Anthony W Wohns; Chaimaa Fadil; Patrick K Albers; Gil McVean
Journal:  Nat Genet       Date:  2019-11       Impact factor: 38.330

6.  Comparative population genomics of latitudinal variation in Drosophila simulans and Drosophila melanogaster.

Authors:  Heather E Machado; Alan O Bergland; Katherine R O'Brien; Emily L Behrman; Paul S Schmidt; Dmitri A Petrov
Journal:  Mol Ecol       Date:  2016-01-18       Impact factor: 6.185

7.  A genomic history of Aboriginal Australia.

Authors:  Anna-Sapfo Malaspinas; Michael C Westaway; Craig Muller; Vitor C Sousa; Oscar Lao; Isabel Alves; Anders Bergström; Georgios Athanasiadis; Jade Y Cheng; Jacob E Crawford; Tim H Heupink; Enrico Macholdt; Stephan Peischl; Simon Rasmussen; Stephan Schiffels; Sankar Subramanian; Joanne L Wright; Anders Albrechtsen; Chiara Barbieri; Isabelle Dupanloup; Anders Eriksson; Ashot Margaryan; Ida Moltke; Irina Pugach; Thorfinn S Korneliussen; Ivan P Levkivskyi; J Víctor Moreno-Mayar; Shengyu Ni; Fernando Racimo; Martin Sikora; Yali Xue; Farhang A Aghakhanian; Nicolas Brucato; Søren Brunak; Paula F Campos; Warren Clark; Sturla Ellingvåg; Gudjugudju Fourmile; Pascale Gerbault; Darren Injie; George Koki; Matthew Leavesley; Betty Logan; Aubrey Lynch; Elizabeth A Matisoo-Smith; Peter J McAllister; Alexander J Mentzer; Mait Metspalu; Andrea B Migliano; Les Murgha; Maude E Phipps; William Pomat; Doc Reynolds; Francois-Xavier Ricaut; Peter Siba; Mark G Thomas; Thomas Wales; Colleen Ma'run Wall; Stephen J Oppenheimer; Chris Tyler-Smith; Richard Durbin; Joe Dortch; Andrea Manica; Mikkel H Schierup; Robert A Foley; Marta Mirazón Lahr; Claire Bowern; Jeffrey D Wall; Thomas Mailund; Mark Stoneking; Rasmus Nielsen; Manjinder S Sandhu; Laurent Excoffier; David M Lambert; Eske Willerslev
Journal:  Nature       Date:  2016-09-21       Impact factor: 49.962

8.  A method for genome-wide genealogy estimation for thousands of samples.

Authors:  Leo Speidel; Marie Forest; Sinan Shi; Simon R Myers
Journal:  Nat Genet       Date:  2019-09-02       Impact factor: 38.330

9.  Inference of chromosomal inversion dynamics from Pool-Seq data in natural and laboratory populations of Drosophila melanogaster.

Authors:  Martin Kapun; Hester van Schalkwyk; Bryant McAllister; Thomas Flatt; Christian Schlötterer
Journal:  Mol Ecol       Date:  2013-12-20       Impact factor: 6.185

10.  Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses.

Authors:  Martin Kapun; Maite G Barrón; Fabian Staubach; Darren J Obbard; R Axel W Wiberg; Jorge Vieira; Clément Goubert; Omar Rota-Stabelli; Maaria Kankare; María Bogaerts-Márquez; Annabelle Haudry; Lena Waidele; Iryna Kozeretska; Elena G Pasyukova; Volker Loeschcke; Marta Pascual; Cristina P Vieira; Svitlana Serga; Catherine Montchamp-Moreau; Jessica Abbott; Patricia Gibert; Damiano Porcelli; Nico Posnien; Alejandro Sánchez-Gracia; Sonja Grath; Élio Sucena; Alan O Bergland; Maria Pilar Garcia Guerreiro; Banu Sebnem Onder; Eliza Argyridou; Lain Guio; Mads Fristrup Schou; Bart Deplancke; Cristina Vieira; Michael G Ritchie; Bas J Zwaan; Eran Tauber; Dorcas J Orengo; Eva Puerma; Montserrat Aguadé; Paul Schmidt; John Parsch; Andrea J Betancourt; Thomas Flatt; Josefa González
Journal:  Mol Biol Evol       Date:  2020-09-01       Impact factor: 16.240

View more
  2 in total

1.  Drosophila Evolution over Space and Time (DEST): A New Population Genomics Resource.

Authors:  Martin Kapun; Joaquin C B Nunez; María Bogaerts-Márquez; Jesús Murga-Moreno; Margot Paris; Joseph Outten; Marta Coronado-Zamora; Courtney Tern; Omar Rota-Stabelli; Maria P García Guerreiro; Sònia Casillas; Dorcas J Orengo; Eva Puerma; Maaria Kankare; Lino Ometto; Volker Loeschcke; Banu S Onder; Jessica K Abbott; Stephen W Schaeffer; Subhash Rajpurohit; Emily L Behrman; Mads F Schou; Thomas J S Merritt; Brian P Lazzaro; Amanda Glaser-Schmitt; Eliza Argyridou; Fabian Staubach; Yun Wang; Eran Tauber; Svitlana V Serga; Daniel K Fabian; Kelly A Dyer; Christopher W Wheat; John Parsch; Sonja Grath; Marija Savic Veselinovic; Marina Stamenkovic-Radak; Mihailo Jelic; Antonio J Buendía-Ruíz; Maria Josefa Gómez-Julián; Maria Luisa Espinosa-Jimenez; Francisco D Gallardo-Jiménez; Aleksandra Patenkovic; Katarina Eric; Marija Tanaskovic; Anna Ullastres; Lain Guio; Miriam Merenciano; Sara Guirao-Rico; Vivien Horváth; Darren J Obbard; Elena Pasyukova; Vladimir E Alatortsev; Cristina P Vieira; Jorge Vieira; Jorge Roberto Torres; Iryna Kozeretska; Oleksandr M Maistrenko; Catherine Montchamp-Moreau; Dmitry V Mukha; Heather E Machado; Keric Lamb; Tânia Paulo; Leeban Yusuf; Antonio Barbadilla; Dmitri Petrov; Paul Schmidt; Josefa Gonzalez; Thomas Flatt; Alan O Bergland
Journal:  Mol Biol Evol       Date:  2021-12-09       Impact factor: 16.240

2.  A natural timeless polymorphism allowing circadian clock synchronization in "white nights".

Authors:  Angelique Lamaze; Chenghao Chen; Solene Leleux; Min Xu; Rebekah George; Ralf Stanewsky
Journal:  Nat Commun       Date:  2022-03-31       Impact factor: 14.919

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.