Literature DB >> 33375476

Predictive Quantitative Structure-Activity Relationship Modeling of the Antifungal and Antibiotic Properties of Triazolothiadiazine Compounds.

Michael Appell1, David L Compton2, Kervin O Evans2.   

Abstract

Predictive models were developed using two-dimensional quantitative structure activity relationship (QSAR) methods coupled with B3LYP/6-311+G** density functional theory modeling that describe the antimicrobial properties of twenty-four triazolothiadiazine compounds against Aspergillus niger, Aspergillus flavus and Penicillium sp., as well as the bacteria Staphylococcus aureus, Bacillus subtilis, Escherichia coli, and Pseudomonas aeruginosa. B3LYP/6-311+G** density functional theory calculations indicated the triazolothiadiazine derivatives possess only modest variation between the frontier orbital properties. Genetic function approximation (GFA) analysis identified the topological and density functional theory derived descriptors for antimicrobial models using a population of 200 models with one to three descriptors that were crossed for 10,000 generations. Two or three descriptor models provided validated predictive models for antifungal and antibiotic properties with R 2 values between 0.725 and 0.768 and no outliers. The best models to describe antimicrobial activities include descriptors related to connectivity, electronegativity, polarizability, and van der Waals properties. The reported method provided robust two-dimensional QSAR models with topological and density functional theory descriptors that explain a variety of antifungal and antibiotic activities for structurally related heterocyclic compounds.

Entities:  

Keywords:  antifungal; antimicrobial; food safety; machine learning; mycotoxin

Year:  2020        PMID: 33375476      PMCID: PMC7838911          DOI: 10.3390/mps4010002

Source DB:  PubMed          Journal:  Methods Protoc        ISSN: 2409-9279


  28 in total

Review 1.  Descriptor selection methods in quantitative structure-activity relationship studies: a review study.

Authors:  Mohsen Shahlaei
Journal:  Chem Rev       Date:  2013-07-03       Impact factor: 60.622

2.  Antifungal efficacy of some natural phenolic compounds against significant pathogenic and toxinogenic filamentous fungi.

Authors:  Martin Zabka; Roman Pavela
Journal:  Chemosphere       Date:  2013-06-22       Impact factor: 7.086

3.  Mold(2), molecular descriptors from 2D structures for chemoinformatics and toxicoinformatics.

Authors:  Huixiao Hong; Qian Xie; Weigong Ge; Feng Qian; Hong Fang; Leming Shi; Zhenqiang Su; Roger Perkins; Weida Tong
Journal:  J Chem Inf Model       Date:  2008-06-20       Impact factor: 4.956

4.  Antifungal activity, mechanism and QSAR studies on chalcones.

Authors:  Ponnurengam Malliappan Sivakumar; Thangavelu Muthu Kumar; Mukesh Doble
Journal:  Chem Biol Drug Des       Date:  2009-07       Impact factor: 2.817

Review 5.  Best Practices for QSAR Model Development, Validation, and Exploitation.

Authors:  Alexander Tropsha
Journal:  Mol Inform       Date:  2010-07-06       Impact factor: 3.353

6.  The development of 3D-QSAR study and recursive partitioning of heterocyclic quinone derivatives with antifungal activity.

Authors:  Su-Young Choi; Jae Hong Shin; Chung Kyu Ryu; Ky-Youb Nam; Kyoung Tai No; Hea-Young Park Choo
Journal:  Bioorg Med Chem       Date:  2005-11-02       Impact factor: 3.641

7.  Synthesis and biological evaluation of dihydroindeno and indeno [1,2-e] [1,2,4]triazolo [3,4-b] [1,3,4]thiadiazines as antimicrobial agents.

Authors:  Om Prakash; Deepak K Aneja; Khalid Hussain; Poonam Lohan; Pooja Ranjan; Sanjiv Arora; Chetan Sharma; Kamal R Aneja
Journal:  Eur J Med Chem       Date:  2011-08-22       Impact factor: 6.514

Review 8.  The current role of Aspergillus and Penicillium in human and animal health.

Authors:  J I Pitt
Journal:  J Med Vet Mycol       Date:  1994

9.  Design and synthesis of some new 1,3,4-thiadiazines with coumarin moieties and their antioxidative and antifungal activity.

Authors:  Milan Cačić; Valentina Pavić; Maja Molnar; Bojan Sarkanj; Elizabeta Has-Schön
Journal:  Molecules       Date:  2014-01-17       Impact factor: 4.411

10.  Dynamic Ochratoxin A Production by Strains of Aspergillus niger Intended Used in Food Industry of China.

Authors:  Xiaomin Han; Hongru Jiang; Fengqin Li
Journal:  Toxins (Basel)       Date:  2019-02-18       Impact factor: 4.546

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