Literature DB >> 33369426

Diflunisal Derivatives as Modulators of ACMS Decarboxylase Targeting the Tryptophan-Kynurenine Pathway.

Yu Yang1, Timothy Borel2, Francisco de Azambuja3, David Johnson4, Jacob P Sorrentino2, Chinedum Udokwu1, Ian Davis1, Aimin Liu1, Ryan A Altman5.   

Abstract

In the kynurenine pathway for tryptophan degradation, an unstable metabolic intermediate, α-amino-β-carboxymuconate-ε-semialdehyde (ACMS), can nonenzymatically cyclize to form quinolinic acid, the precursor for de novo biosynthesis of nicotinamide adenine dinucleotide (NAD+). In a competing reaction, ACMS is decarboxylated by ACMS decarboxylase (ACMSD) for further metabolism and energy production. Therefore, the inhibition of ACMSD increases NAD+ levels. In this study, an Food and Drug Administration (FDA)-approved drug, diflunisal, was found to competitively inhibit ACMSD. The complex structure of ACMSD with diflunisal revealed a previously unknown ligand-binding mode and was consistent with the results of inhibition assays, as well as a structure-activity relationship (SAR) study. Moreover, two synthesized diflunisal derivatives showed half-maximal inhibitory concentration (IC50) values 1 order of magnitude better than diflunisal at 1.32 ± 0.07 μM (22) and 3.10 ± 0.11 μM (20), respectively. The results suggest that diflunisal derivatives have the potential to modulate NAD+ levels. The ligand-binding mode revealed here provides a new direction for developing inhibitors of ACMSD.

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Year:  2020        PMID: 33369426      PMCID: PMC7856275          DOI: 10.1021/acs.jmedchem.0c01762

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  46 in total

1.  Human α-amino-β-carboxymuconate-ε-semialdehyde decarboxylase (ACMSD): a structural and mechanistic unveiling.

Authors:  Lu Huo; Fange Liu; Hiroaki Iwaki; Tingfeng Li; Yoshie Hasegawa; Aimin Liu
Journal:  Proteins       Date:  2014-11-21

2.  On the role of the crystal environment in determining protein side-chain conformations.

Authors:  Matthew P Jacobson; Richard A Friesner; Zhexin Xiang; Barry Honig
Journal:  J Mol Biol       Date:  2002-07-12       Impact factor: 5.469

3.  Large-scale systematic analysis of 2D fingerprint methods and parameters to improve virtual screening enrichments.

Authors:  Madhavi Sastry; Jeffrey F Lowrie; Steven L Dixon; Woody Sherman
Journal:  J Chem Inf Model       Date:  2010-05-24       Impact factor: 4.956

4.  Quaternary structure of α-amino-β-carboxymuconate-ϵ-semialdehyde decarboxylase (ACMSD) controls its activity.

Authors:  Yu Yang; Ian Davis; Tsutomu Matsui; Ivan Rubalcava; Aimin Liu
Journal:  J Biol Chem       Date:  2019-06-12       Impact factor: 5.157

5.  Linking crystallographic model and data quality.

Authors:  P Andrew Karplus; Kay Diederichs
Journal:  Science       Date:  2012-05-25       Impact factor: 47.728

6.  The crystal structure of human alpha-amino-beta-carboxymuconate-epsilon-semialdehyde decarboxylase in complex with 1,3-dihydroxyacetonephosphate suggests a regulatory link between NAD synthesis and glycolysis.

Authors:  Silvia Garavaglia; Silvia Perozzi; Luca Galeazzi; Nadia Raffaelli; Menico Rizzi
Journal:  FEBS J       Date:  2009-10-16       Impact factor: 5.542

7.  Quinolinic acid: an endogenous metabolite that produces axon-sparing lesions in rat brain.

Authors:  R Schwarcz; W O Whetsell; R M Mangano
Journal:  Science       Date:  1983-01-21       Impact factor: 47.728

8.  The Structural Basis for Nonsteroidal Anti-Inflammatory Drug Inhibition of Human Dihydrofolate Reductase.

Authors:  Michael R Duff; Scott A Gabel; Lars C Pedersen; Eugene F DeRose; Juno M Krahn; Elizabeth E Howell; Robert E London
Journal:  J Med Chem       Date:  2020-07-28       Impact factor: 7.446

9.  Alpha-Amino-Beta-Carboxy-Muconate-Semialdehyde Decarboxylase Controls Dietary Niacin Requirements for NAD+ Synthesis.

Authors:  Laura Palzer; Jessica J Bader; Frances Angel; Megan Witzel; Sydney Blaser; Alexis McNeil; Miles K Wandersee; N Adrian Leu; Christopher J Lengner; Clara E Cho; Kevin D Welch; James B Kirkland; Ralph G Meyer; Mirella L Meyer-Ficca
Journal:  Cell Rep       Date:  2018-10-30       Impact factor: 9.423

10.  De novo NAD+ synthesis enhances mitochondrial function and improves health.

Authors:  Elena Katsyuba; Adrienne Mottis; Marika Zietak; Francesca De Franco; Vera van der Velpen; Karim Gariani; Dongryeol Ryu; Lucia Cialabrini; Olli Matilainen; Paride Liscio; Nicola Giacchè; Nadine Stokar-Regenscheit; David Legouis; Sophie de Seigneux; Julijana Ivanisevic; Nadia Raffaelli; Kristina Schoonjans; Roberto Pellicciari; Johan Auwerx
Journal:  Nature       Date:  2018-10-24       Impact factor: 49.962

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  1 in total

1.  Structural Basis of Human Dimeric α-Amino-β-Carboxymuconate-ε-Semialdehyde Decarboxylase Inhibition With TES-1025.

Authors:  Michele Cianci; Nicola Giacchè; Lucia Cialabrini; Andrea Carotti; Paride Liscio; Emiliano Rosatelli; Francesca De Franco; Massimiliano Gasparrini; Janet Robertson; Adolfo Amici; Nadia Raffaelli; Roberto Pellicciari
Journal:  Front Mol Biosci       Date:  2022-04-07
  1 in total

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