Literature DB >> 33366619

Sequencing and analysis of the complete mitochondrial genome of Mansonia uniformis (Dipera: Culicidae).

Junhua Tian1, Bin Yu1, Xianfeng Shi2, Huan Liang2, Dehuan Wang2, Mihong Ge2.   

Abstract

In this study, we sequenced and analyzed the complete mitochondrial genome of Mansonia uniformis, and this is the first report on the genus Mansonia. The circular mitogenome is 15,603 bp long and contains 13 protein-coding genes (PCGs), 22 tRNA genes, 2 ribosomal RNA genes, and a A + T-rich control region. Most PCGs start with ATN codons, and end with TAA, except for COX1 starting with TCG codons and COX2 ending with a single thymine stop codon. The phylogenetic tree based on the COX1 gene showed that M. uniformis formed a monophyletic clade, sister to other seven genus from the subfamily Culicinae.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Culicidae; Mansonia uniformis; Mitochondrial genome; phylogeny

Year:  2020        PMID: 33366619      PMCID: PMC7748744          DOI: 10.1080/23802359.2019.1704638

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


Culicidae, known as mosquito, constitutes 41 genera, 201 subgenera, and 3573 species in the world. A total of 419 species have been recorded from China, representing 20 genera and 63 subgenus (Fu and Chen 2018). The subfamily Culicinae is considered to be the largest and polyphyletic with a total of 3048 species belonging to 38 genera and 11 tribes (Harbach 2007). However, the current knowledge about the taxonomy and systematics of Culicinae is still limited (Reidenbach et al. 2009). In this article, we first present the mitogenome sequence of the genus Mansonia, namely Mansonia uniformis, and hope this sequence could contribute to further studies on molecular phylogenetic analysis and accurate identification. In this study, the samples were collected in Wuhan City, Hubei province, China (30°42′35″N, 114°28′11″E) and stored in Wuhan Academy of Agricultural Sciences in −80 °0 Ultra-low Temperature Freezer (Sample code is ZWSmosquito-20190522). High-throughput sequencing method (Tian et al. 2019) was employed to determine the complete mitogenome of M. uniformis (accession no. MN342085) with further bioinformatic analysis. The overall base composition (15,603 bp) is 39.26%, 38.17%, 14.15%, and 8.42% for A, T, C, and G, respectively, with the A + T content of 77.43%. It contains typical 13 protein-coding genes (PCGs), 2 rRNA genes (12S and 16S rRNA), 22 transfer RNA genes (tRNA), and a control region. Its gene organization, order, and orientation are similar to all other available mitogenomes in mosquito species (Behura et al. 2011; Hardy et al. 2016), except for Dixella aestivalis from the subfamily Dixinae (Briscoe et al. 2017). Most PCGs start with typical ATN codons (seven ATG, three ATT, one ATC, and one ATA) and end with standard canonical TAA as their termination codons, except for COX1 starting with TCG codons and COX2 ending with a single thymine stop codon. The initiation codon TCG was commonly observed in other available Diptera mitochondrial genomes (Li et al. 2016; Ge et al. 2019). The length of the 22 tRNA genes varies from 64 to 72 bp. Eight tRNA genes (tRNA, tRNA tRNA tRNA, tRNA, tRNA, tRNA, and tRNA) were distributed on the light strand. Totally 17 locations of overlapping sequence are between neighboring genes, ranging from 1 to 8 bp in length, and 51 bp in total. Furthermore, the lengths of spacer sequences are 1–18 bp in 11 locations, and 62 bp in total. 12S and 16S rRNA genes are located between the tRNA and the control region, and separated by the tRNA gene. The 764 bp control region is located between the 12s rRNA and tRNA–tRNA–tRNA cluster, with the base composition of 43.72% A, 46.99% T, 6.54% C, and 2.75% G. The phylogenetic analysis was performed by MEGA version 6.06 program (Tamura et al. 2013) based on COX1 gene sequences of M. uniformis with 16 closely related species, and Dixella aestivalis used as the outgroup (Figure 1). The phylogenetic tree showed that M. uniformis first clustered together with five species of genus Culex, and then they constituted a sister-group relationship with other four genus. The results supported that the genus Mansonia should be classified into the subfamily Culicinae.
Figure 1.

The neighbor-joining tree of M. uniformis based on COX1 gene sequences with 16 closely related species of 7 genus Culex, Sabethes, Aedes, Haemagogus, Ochlerotatus, Bironella, and Anopheles from the subfamily Culicinae. Genus was Dixella used as outgroup. The tree was constructed by MEGA 6.06 with 1000 bootstraps.

The neighbor-joining tree of M. uniformis based on COX1 gene sequences with 16 closely related species of 7 genus Culex, Sabethes, Aedes, Haemagogus, Ochlerotatus, Bironella, and Anopheles from the subfamily Culicinae. Genus was Dixella used as outgroup. The tree was constructed by MEGA 6.06 with 1000 bootstraps.
  6 in total

1.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

2.  The complete mitochondrial DNA genomes for two lineages of Aedes notoscriptus (Diptera: Culicidae).

Authors:  C M Hardy; L N Court; M J Morgan; C E Webb
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2014-10-28       Impact factor: 1.514

3.  Complete sequences of mitochondria genomes of Aedes aegypti and Culex quinquefasciatus and comparative analysis of mitochondrial DNA fragments inserted in the nuclear genomes.

Authors:  Susanta K Behura; Neil F Lobo; Brian Haas; Becky deBruyn; Diane D Lovin; Martin F Shumway; Daniela Puiu; Jeanne Romero-Severson; Vishvanath Nene; David W Severson
Journal:  Insect Biochem Mol Biol       Date:  2011-05-27       Impact factor: 4.714

4.  Phylogenetic analysis and temporal diversification of mosquitoes (Diptera: Culicidae) based on nuclear genes and morphology.

Authors:  Kyanne R Reidenbach; Shelley Cook; Matthew A Bertone; Ralph E Harbach; Brian M Wiegmann; Nora J Besansky
Journal:  BMC Evol Biol       Date:  2009-12-22       Impact factor: 3.260

5.  The complete mitochondrial genomes of Musca domestica and Scathophaga stercoraria (Diptera: Muscoidea: Muscidae and Scathophagidae).

Authors:  Xuankun Li; Yuyu Wang; Shuai Su; Ding Yang
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2014-08-27       Impact factor: 1.514

6.  The complete mitochondrial genome of Dixella aestivalis (Diptera: Nematocera: Dixidae).

Authors:  Andrew G Briscoe; Duncan Sivell; Ralph E Harbach
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-12-18       Impact factor: 1.514

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.