| Literature DB >> 33363398 |
Xuyu Gu1, Zhenwei Mao2, Huiwen Pan2, Chen Zou2, Guowen Ding2, Yu Fan2.
Abstract
PURPOSE: To explore the relationship between rs2297440 and rs2297441 polymorphisms of TNFRSF6B gene and susceptibility to gastric cancer.Entities:
Keywords: TNFRSF6B gene; gastric cancer; rs2297440; rs2297441; single nucleotide polymorphism
Year: 2020 PMID: 33363398 PMCID: PMC7751833 DOI: 10.2147/PGPM.S283308
Source DB: PubMed Journal: Pharmgenomics Pers Med ISSN: 1178-7066
Primary Information for Gene TNFRSF6B Gene rs2297440 and rs2297441 Polymorphisms
| Genotyped SNPs | Gene | Chr Pos (NCBI Build 38) | Category | MAFa for Chinese in Database | MAF in Our Controls (n = 678) | P value for HWEb Test in Our Controls | Genotyping Method | Genotyping Value (%) |
|---|---|---|---|---|---|---|---|---|
| rs2257440 | 20:63,696,914 | Coding_sequence_variant, missense_variant, synonymous_variant | C=0.392 | 0.342 | 0.258 | Snapshot | 98.57 | |
| rs2297441 | 20:63,696229 | Upstream_transcript_variant | A=0.433 | 0.333 | 0.193 | Snapshot | 98.80 |
Abbreviations: aMAF, minor allele frequency; bHWE, Hardy–Weinberg equilibrium.
Distribution of Selected Demographic Variables and Risk Factors in GC Cases and Controls
| Factors | Overall Cases (n=577) | Overall Controls (n=678) | |
|---|---|---|---|
| n (%) | n (%) | ||
| Age (years) | 61.34±11.097 | 62.31±7.549 | 0.065 |
| Age (years) | |||
| < 62 | 268 (46.45) | 324 (47.79) | |
| ≥62 | 309(53.55) | 354(52.21) | 0.635 |
| Sex | |||
| Male | 394 (68.28) | 456(67.26) | |
| Female | 183(31.72) | 222(32.74) | 0.698 |
| Smoking status | |||
| Never | 378 (65.51) | 493(72.71) | |
| Ever | 199(34.49) | 185 (27.29) | 0.006 |
| Alcohol use | |||
| Never | 453 (78.51) | 520(76.70) | |
| Ever | 124 (21.49) | 158(23.30) | 0.443 |
TNFRSF6B Gene rs2257440 Polymorphism in GC Cases and Controls and Logistic Regression Analysis
| Genotype | GC Cases | Controls | Crude OR | Adjusted OR | ||||
|---|---|---|---|---|---|---|---|---|
| n | % | n | % | |||||
| rs2257440 | ||||||||
| TT | 237 | 41.43 | 297 | 44.66 | 1.00 | 1.00 | ||
| TC | 278 | 48.60 | 285 | 42.86 | 1.22(0.96–1.95) | 0.097 | 1.25(0.98–1.59) | 0.067 |
| CC | 57 | 9.97 | 83 | 12.48 | 0.86(0.59–1.26) | 0.436 | 0.96(0.79–1.16) | 0.622 |
| TC+CC | 335 | 58.57 | 368 | 55.34 | 1.14(0.91–1.43) | 0.253 | 1.07(0.96–1.20) | 0.202 |
| CC | 57 | 9.97 | 83 | 12.48 | 0.78(0.54–1.11) | 0.164 | 1.08(0.96–1.21) | 0.186 |
| TT+TC | 515 | 90.03 | 582 | 87.52 | 1.00 | 1.00 | ||
TNFRSF6B Gene rs2297441 Polymorphism in GC Cases and Controls and Logistic Regression Analysis
| Genotype | GC Cases | Controls | Crude OR | Adjusted OR | ||||
|---|---|---|---|---|---|---|---|---|
| n | % | n | % | |||||
| Rs2297441 | ||||||||
| GG | 240 | 42.33 | 315 | 46.81 | 1.00 | 1.00 | ||
| AG | 276 | 48.68 | 280 | 41.60 | 1.29(1.02–1.64) | 0.033 | 1.32(1.04–1.67) | 0.025 |
| AA | 51 | 8.99 | 78 | 11.59 | 0.86(0.58–1.27) | 0.443 | 0.95(0.78–1.16) | 0.592 |
| AG+AA | 327 | 57.67 | 358 | 53.19 | 0.20(0.96–1.50) | 0.114 | 1.10(0.99–1.24) | 0.091 |
| AA | 51 | 8.99 | 78 | 11.59 | 0.75(0.52–1.09) | 0.136 | 0.87(0.72–1.05) | 0.142 |
| GG+AG | 516 | 91.01 | 595 | 88.41 | 1.00 | 1.00 | ||
Analysis of rs2257440 rs2297441 Alleles Between Cases and Controls
| locus | Variable | Case | Control | OR (95% CI) | |
|---|---|---|---|---|---|
| rs2257440 | T allele | 752(65.73) | 879(66.09) | ||
| C allele | 392(34.27) | 451(33.91) | 0.852 | 1.02(0.86–1.20) | |
| rs2297441 | G allele | 756(66.67) | 910(67.61) | ||
| A allele | 378(33.33) | 436(32.39) | 0.619 | 1.04(0.88–1.24) |
Stratified Analyses Between rs2257440 Polymorphism and Risk by Sex, Age, Smoking Status and Alcohol Consumption
| Variable | (Case/Control) | Adjusted OR (95% CI); | ||||||
|---|---|---|---|---|---|---|---|---|
| TT | TC | CC | TT | TC | CC | (TC+CC)VSTT | CCVS(TT+TC) | |
| Sex | ||||||||
| Male | 164/202 | 188/190 | 39/52 | 1.00 | 1.22(0.91–1.63); | 0.92(0.58–1.47); | 1.16(0.88–1.52); | 0.84(0.54–1.30); |
| Female | 73/95 | 90/95 | 18/31 | 1.00 | 1.23(0.81–1.88); | 0.76(0.39–1.46); | 1.12(0.75–1.80); | 0.68(0.37–1.26); |
| Age | ||||||||
| <62 | 102/144 | 136/130 | 27/41 | 1.00 | 1.48(1.04–2.10); | 0.93(0.54–1.61); | 1.35(0.97–1.88); | 0.76(0.45–1.27); |
| ≥62 | 135/153 | 142/155 | 30/42 | 1.00 | 1.04(0.75–1.44); | 0.81(0.48–1.37); | 0.99(0.73–1.35); | 0.79(0.48–1.30); |
| Smoking status | ||||||||
| Never | 152/214 | 185/209 | 38/63 | 1.00 | 1.25(0.94–1.66); | 0.85(0.54–1.34); | 1.15(0.88–1.52); | 0.76(0.49–1.16); |
| Ever | 85/83 | 93/76 | 19/20 | 1.00 | 1.19(0.18–1.83); | 0.93(0.46–1.86); | 1.14(0.76–1.71); | 0.85(0.44–1.65); |
| Alcohol consumption | ||||||||
| Never | 194/224 | 215/221 | 41/68 | 1.00 | 1.12(0.86–1.47); | 0.70(0.45–1.07); | 1.02(0.79–1.32); | 0.66(0.44–0.99); |
| Ever | 43/73 | 63/64 | 16/15 | 1.00 | 1.67(1.00–2.29); | 1.81(0.82–4.03); | 1.70(1.04–2.77); | 1.38(0.65–2.92); |
Stratified Analyses Between rs2297441 Polymorphism and Risk by Sex, Age, Smoking Status and Alcohol Consumption
| Variable | (Case/Control) | Adjusted OR (95% CI); | ||||||
|---|---|---|---|---|---|---|---|---|
| GG | AG | AA | GG | AG | AA | (AG+AA)VS.GG | AAVS.(GG+AG) | |
| Sex | ||||||||
| Male | 156/216 | 194/185 | 37/51 | 1.00 | 1.45(1.09–1.94); | 1.01(0.63–1.61); | 0.30(0.98–1.71); | 0.83(0.53–1.30); |
| Female | 84/99 | 82/95 | 14/27 | 1.00 | 1.02(1.67–1.54); | 0.61(0.30–1.24); | 0.93(0.63–1.38); | 0.61(0.31–1.19); |
| Age | ||||||||
| <62 | 116/153 | 127/129 | 19/41 | 1.00 | 1.30(0.92–1.83); | 0.61(0.34–1.11); | 1.13(0.82–1.57); | 0.54(0.30–0.95); |
| ≥62 | 124/162 | 149/151 | 32/37 | 1.00 | 1.29(0.93–1.79); | 1.13(0.67–1.92); | 1.26(0.92-)1.72; | 0.50(0.32–0.79); |
| Smoking status | ||||||||
| Never | 156/228 | 181/202 | 35/59 | 1.00 | 1.31(0.98–1.74); | 0.87(0.55–1.38); | 1.21(0.92–1.59); | 0.76(0.49–1.18); |
| Ever | 84/87 | 95/78 | 16/19 | 1.00 | 1.26(0.83–1.93); | 0.87(0.42–1.81); | 1.19(0.79–1.78); | 0.78(0.39–1.56); |
| Alcohol consumption | ||||||||
| Never | 195/238 | 209/214 | 40/64 | 1.00 | 1.19(0.91–1.56); | 0.76(0.49–1.18); | 1.09(0.85–1.41); | 0.70(0.46–1.06); |
| Ever | 45/77 | 67/66 | 11/14 | 1.00 | 1.74(1.05–2.87); | 1.34(0.56–3.21); | 1.88(1.17–3.03); | 1.00(0.44–2.30); |