Literature DB >> 33362239

Multi-scale modeling of macrophage-T cell interactions within the tumor microenvironment.

Colin G Cess1, Stacey D Finley1,2,3.   

Abstract

Within the tumor microenvironment, macrophages exist in an immunosuppressive state, preventing T cells from eliminating the tumor. Due to this, research is focusing on immunotherapies that specifically target macrophages in order to reduce their immunosuppressive capabilities and promote T cell function. In this study, we develop an agent-based model consisting of the interactions between macrophages, T cells, and tumor cells to determine how the immune response changes due to three macrophage-based immunotherapeutic strategies: macrophage depletion, recruitment inhibition, and macrophage reeducation. We find that reeducation, which converts the macrophages into an immune-promoting phenotype, is the most effective strategy and that the macrophage recruitment rate and tumor proliferation rate (tumor-specific properties) have large impacts on therapy efficacy. We also employ a novel method of using a neural network to reduce the computational complexity of an intracellular signaling mechanistic model.

Entities:  

Year:  2020        PMID: 33362239     DOI: 10.1371/journal.pcbi.1008519

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  11 in total

1.  SET/PP2A signaling regulates macrophage positioning in hypoxic tumor regions by amplifying chemotactic responses.

Authors:  Shaolong Zhang; Jingping Zhou; Pengzhao Shang; Guomeng Zhao; Anlei Wang; Jinlei Mao; Yuhang Tao; Ziyi Chen; Xuehao Wang; Changying Guo
Journal:  Exp Mol Med       Date:  2022-10-12       Impact factor: 12.153

2.  Agent-based computational modeling of glioblastoma predicts that stromal density is central to oncolytic virus efficacy.

Authors:  Adrianne L Jenner; Munisha Smalley; David Goldman; William F Goins; Charles S Cobbs; Ralph B Puchalski; E Antonio Chiocca; Sean Lawler; Paul Macklin; Aaron Goldman; Morgan Craig
Journal:  iScience       Date:  2022-05-13

3.  A global method for fast simulations of molecular dynamics in multiscale agent-based models of biological tissues.

Authors:  Daniel Bergman; Randy F Sweis; Alexander T Pearson; Fereshteh Nazari; Trachette L Jackson
Journal:  iScience       Date:  2022-05-13

4.  A data-driven computational model enables integrative and mechanistic characterization of dynamic macrophage polarization.

Authors:  Chen Zhao; Thalyta X Medeiros; Richard J Sové; Brian H Annex; Aleksander S Popel
Journal:  iScience       Date:  2021-01-29

5.  Multi-Level Computational Modeling of Anti-Cancer Dendritic Cell Vaccination Utilized to Select Molecular Targets for Therapy Optimization.

Authors:  Xin Lai; Christine Keller; Guido Santos; Niels Schaft; Jan Dörrie; Julio Vera
Journal:  Front Cell Dev Biol       Date:  2022-02-02

6.  Dynamic Multiscale Regulation of Perfusion Recovery in Experimental Peripheral Arterial Disease: A Mechanistic Computational Model.

Authors:  Chen Zhao; Joshua L Heuslein; Yu Zhang; Brian H Annex; Aleksander S Popel
Journal:  JACC Basic Transl Sci       Date:  2022-01-05

7.  Step-by-step comparison of ordinary differential equation and agent-based approaches to pharmacokinetic-pharmacodynamic models.

Authors:  Van Thuy Truong; Paul G Baverel; Grant D Lythe; Paolo Vicini; James W T Yates; Vincent F S Dubois
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2022-02-01

8.  Simulations of tumor growth and response to immunotherapy by coupling a spatial agent-based model with a whole-patient quantitative systems pharmacology model.

Authors:  Alvaro Ruiz-Martinez; Chang Gong; Hanwen Wang; Richard J Sové; Haoyang Mi; Holly Kimko; Aleksander S Popel
Journal:  PLoS Comput Biol       Date:  2022-07-22       Impact factor: 4.779

9.  Mapping CAR T-Cell Design Space Using Agent-Based Models.

Authors:  Alexis N Prybutok; Jessica S Yu; Joshua N Leonard; Neda Bagheri
Journal:  Front Mol Biosci       Date:  2022-07-12

10.  Investigating Two Modes of Cancer-Associated Antigen Heterogeneity in an Agent-Based Model of Chimeric Antigen Receptor T-Cell Therapy.

Authors:  Tina Giorgadze; Henning Fischel; Ansel Tessier; Kerri-Ann Norton
Journal:  Cells       Date:  2022-10-09       Impact factor: 7.666

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