Literature DB >> 33357824

Recovery of single source DNA profiles from mixtures by direct single cell subsampling and simplified micromanipulation.

Kaitlin Huffman1, Erin Hanson2, Jack Ballantyne3.   

Abstract

Deconvolution of forensic DNA mixtures into their individual component DNA (geno)types is of great investigative value, though often complex and difficult. Two-person mixtures comprising a major and minor contributor are often easily interpreted although, when the DNA ratio of the two individuals is approximately equal (~1:1), deconvolution and interpretation becomes much more difficult. To address this issue, a physical separation of individual-, two- or three- cell subsamples prior to autosomal STR analysis was performed using a simplified micromanipulation technique paired with a decreased reaction volume and increased cycle number PCR. Using this method, single and multiple buccal epithelial cells were collected from a 1:1 two-person mixture (i.e. from individual 'A' and 'B') and directly amplified, omitting standard DNA extraction and purification steps. Single cell subsamples resulted in partial single-source profiles for both contributors while, in accordance with expectations of a quasi-binomial sampling schema, two- and three-cell subsamples resulted in single source informative partial profiles of individual A and individual B as well as complete consensus profiles, and equally mixed 1:1 (2-cell subsamples) and 2:1 (3-cell subsamples) admixed profiles of individual A and B.This proof-of-concept approach shows promise in permitting the DNA deconvolution of mixed samples where the individual contributors are present in similar amounts that would otherwise be difficult to interpret, resulting in an increase in evidentiary value. The subsampling approach can be readily investigated for DNA casework applications without additional investment in costly, new equipment, requiring only a stereo microscope and a tungsten needle.
Copyright © 2020 The Chartered Society of Forensic Sciences. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cell isolation and recovery; Forensic genetics; Micro-manipulation; Mixture de-convolution; Single cell analysis

Mesh:

Substances:

Year:  2020        PMID: 33357824     DOI: 10.1016/j.scijus.2020.10.005

Source DB:  PubMed          Journal:  Sci Justice        ISSN: 1355-0306            Impact factor:   2.124


  5 in total

1.  Precision DNA Mixture Interpretation with Single-Cell Profiling.

Authors:  Jianye Ge; Jonathan L King; Amy Smuts; Bruce Budowle
Journal:  Genes (Basel)       Date:  2021-10-20       Impact factor: 4.096

Review 2.  New Perspectives for Whole Genome Amplification in Forensic STR Analysis.

Authors:  Richard Jäger
Journal:  Int J Mol Sci       Date:  2022-06-25       Impact factor: 6.208

3.  Cell Subsampling Recovers Probative DNA Profile Information from Unresolvable/Undetectable Minor Donors in Mixtures.

Authors:  Kaitlin Huffman; Erin Hanson; Jack Ballantyne
Journal:  Genes (Basel)       Date:  2022-06-22       Impact factor: 4.141

4.  Probabilistic Genotyping of Single Cell Replicates from Mixtures Involving First-Degree Relatives Prevents the False Inclusions of Non-Donor Relatives.

Authors:  Kaitlin Huffman; Jack Ballantyne
Journal:  Genes (Basel)       Date:  2022-09-15       Impact factor: 4.141

5.  Pushing the Boundaries: Forensic DNA Phenotyping Challenged by Single-Cell Sequencing.

Authors:  Marta Diepenbroek; Birgit Bayer; Katja Anslinger
Journal:  Genes (Basel)       Date:  2021-08-30       Impact factor: 4.096

  5 in total

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