Literature DB >> 33353977

A least microenvironmental uncertainty principle (LEUP) as a generative model of collective cell migration mechanisms.

Arnab Barua1,2, Josue M Nava-Sedeño2,3, Michael Meyer-Hermann1,4, Haralampos Hatzikirou5,6,7.   

Abstract

Collective migration is commonly observed in groups of migrating cells, in the form of swarms or aggregates. Mechanistic models have proven very useful in understanding collective cell migration. Such models, either explicitly consider the forces involved in the interaction and movement of individuals or phenomenologically define rules which mimic the observed behavior of cells. However, mechanisms leading to collective migration are varied and specific to the type of cells involved. Additionally, the precise and complete dynamics of many important chemomechanical factors influencing cell movement, from signalling pathways to substrate sensing, are typically either too complex or largely unknown. The question is how to make quantitative/qualitative predictions of collective behavior without exact mechanistic knowledge. Here we propose the least microenvironmental uncertainty principle (LEUP) that may serve as a generative model of collective migration without precise incorporation of full mechanistic details. Using statistical physics tools, we show that the famous Vicsek model is a special case of LEUP. Finally, to test the biological applicability of our theory, we apply LEUP to construct a model of the collective behavior of spherical Serratia marcescens bacteria, where the underlying migration mechanisms remain elusive.

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Year:  2020        PMID: 33353977      PMCID: PMC7755925          DOI: 10.1038/s41598-020-79119-y

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  23 in total

1.  Receptor sensitivity in bacterial chemotaxis.

Authors:  Victor Sourjik; Howard C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

2.  Infinite covariant density for diffusion in logarithmic potentials and optical lattices.

Authors:  David A Kessler; Eli Barkai
Journal:  Phys Rev Lett       Date:  2010-09-17       Impact factor: 9.161

3.  Power-law tail distributions and nonergodicity.

Authors:  Eric Lutz
Journal:  Phys Rev Lett       Date:  2004-11-04       Impact factor: 9.161

4.  Noisy information processing through transcriptional regulation.

Authors:  Eric Libby; Theodore J Perkins; Peter S Swain
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-09       Impact factor: 11.205

5.  Deep reinforcement learning of cell movement in the early stage of C.elegans embryogenesis.

Authors:  Zi Wang; Dali Wang; Chengcheng Li; Yichi Xu; Husheng Li; Zhirong Bao
Journal:  Bioinformatics       Date:  2018-09-15       Impact factor: 6.937

6.  Dynamics of DNA melting.

Authors:  A Bar; Y Kafri; D Mukamel
Journal:  J Phys Condens Matter       Date:  2008-12-17       Impact factor: 2.333

7.  Dynamic analysis of vascular morphogenesis using transgenic quail embryos.

Authors:  Yuki Sato; Greg Poynter; David Huss; Michael B Filla; Andras Czirok; Brenda J Rongish; Charles D Little; Scott E Fraser; Rusty Lansford
Journal:  PLoS One       Date:  2010-09-14       Impact factor: 3.240

8.  Fluid flows created by swimming bacteria drive self-organization in confined suspensions.

Authors:  Enkeleida Lushi; Hugo Wioland; Raymond E Goldstein
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-23       Impact factor: 11.205

9.  An end-to-end software solution for the analysis of high-throughput single-cell migration data.

Authors:  Paola Masuzzo; Lynn Huyck; Aleksandra Simiczyjew; Christophe Ampe; Lennart Martens; Marleen Van Troys
Journal:  Sci Rep       Date:  2017-02-13       Impact factor: 4.379

10.  Collective motion of spherical bacteria.

Authors:  Amit Rabani; Gil Ariel; Avraham Be'er
Journal:  PLoS One       Date:  2013-12-20       Impact factor: 3.240

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  1 in total

Review 1.  Roadmap on plasticity and epigenetics in cancer.

Authors:  Jasmine Foo; David Basanta; Russell C Rockne; Carly Strelez; Curran Shah; Kimya Ghaffarian; Shannon M Mumenthaler; Kelly Mitchell; Justin D Lathia; David Frankhouser; Sergio Branciamore; Ya-Huei Kuo; Guido Marcucci; Robert Vander Velde; Andriy Marusyk; Sui Huang; Kishore Hari; Mohit Kumar Jolly; Haralampos Hatzikirou; Kamrine E Poels; Mary E Spilker; Blerta Shtylla; Mark Robertson-Tessi; Alexander R A Anderson
Journal:  Phys Biol       Date:  2022-04-18       Impact factor: 2.959

  1 in total

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