Literature DB >> 33353944

TBPL2/TFIIA complex establishes the maternal transcriptome through oocyte-specific promoter usage.

Changwei Yu1,2,3,4, Nevena Cvetesic5, Vincent Hisler1,2,3,4, Kapil Gupta6, Tao Ye1,2,3,4, Emese Gazdag1,2,3,4, Luc Negroni1,2,3,4, Petra Hajkova5, Imre Berger6, Boris Lenhard5, Ferenc Müller7, Stéphane D Vincent8,9,10,11, László Tora12,13,14,15.   

Abstract

During oocyte growth, transcription is required to create RNA and protein reserves to achieve maternal competence. During this period, the general transcription factor TATA binding protein (TBP) is replaced by its paralogue, TBPL2 (TBP2 or TRF3), which is essential for RNA polymerase II transcription. We show that in oocytes TBPL2 does not assemble into a canonical TFIID complex. Our transcript analyses demonstrate that TBPL2 mediates transcription of oocyte-expressed genes, including mRNA survey genes, as well as specific endogenous retroviral elements. Transcription start site (TSS) mapping indicates that TBPL2 has a strong preference for TATA-like motif in core promoters driving sharp TSS selection, in contrast with canonical TBP/TFIID-driven TATA-less promoters that have broader TSS architecture. Thus, we show a role for the TBPL2/TFIIA complex in the establishment of the oocyte transcriptome by using a specific TSS recognition code.

Entities:  

Mesh:

Substances:

Year:  2020        PMID: 33353944      PMCID: PMC7755920          DOI: 10.1038/s41467-020-20239-4

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  67 in total

1.  The general transcription factor TAF7 is essential for embryonic development but not essential for the survival or differentiation of mature T cells.

Authors:  Anne Gegonne; Xuguang Tai; Jinghui Zhang; Gang Wu; Jianjian Zhu; Aki Yoshimoto; Jeffrey Hanson; Constance Cultraro; Qing-Rong Chen; Terry Guinter; Zhihui Yang; Karen Hathcock; Alfred Singer; Jaime Rodriguez-Canales; Lino Tessarollo; Susan Mackem; Daoud Meerzaman; Ken Buetow; Dinah S Singer
Journal:  Mol Cell Biol       Date:  2012-03-12       Impact factor: 4.272

Review 2.  The maternal-to-zygotic transition revisited.

Authors:  Nadine L Vastenhouw; Wen Xi Cao; Howard D Lipshitz
Journal:  Development       Date:  2019-06-12       Impact factor: 6.868

3.  Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA.

Authors:  Anas Fadloun; Stéphanie Le Gras; Bernard Jost; Céline Ziegler-Birling; Hazuki Takahashi; Eduardo Gorab; Piero Carninci; Maria-Elena Torres-Padilla
Journal:  Nat Struct Mol Biol       Date:  2013-01-27       Impact factor: 15.369

4.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

5.  TBP is not universally required for zygotic RNA polymerase II transcription in zebrafish.

Authors:  F Müller; L Lakatos; J Dantonel; U Strähle; L Tora
Journal:  Curr Biol       Date:  2001-02-20       Impact factor: 10.834

6.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.

Authors:  Michael I Love; Wolfgang Huber; Simon Anders
Journal:  Genome Biol       Date:  2014       Impact factor: 13.583

7.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

8.  Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes.

Authors:  Vedran Franke; Sravya Ganesh; Rosa Karlic; Radek Malik; Josef Pasulka; Filip Horvat; Maja Kuzman; Helena Fulka; Marketa Cernohorska; Jana Urbanova; Eliska Svobodova; Jun Ma; Yutaka Suzuki; Fugaku Aoki; Richard M Schultz; Kristian Vlahovicek; Petr Svoboda
Journal:  Genome Res       Date:  2017-05-18       Impact factor: 9.043

9.  SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA.

Authors:  Nevena Cvetesic; Harry G Leitch; Malgorzata Borkowska; Ferenc Müller; Piero Carninci; Petra Hajkova; Boris Lenhard
Journal:  Genome Res       Date:  2018-11-07       Impact factor: 9.043

Review 10.  Defending the genome from the enemy within: mechanisms of retrotransposon suppression in the mouse germline.

Authors:  James H Crichton; Donncha S Dunican; Marie Maclennan; Richard R Meehan; Ian R Adams
Journal:  Cell Mol Life Sci       Date:  2013-09-18       Impact factor: 9.261

View more
  9 in total

1.  PA28γ-20S proteasome is a proteolytic complex committed to degrade unfolded proteins.

Authors:  Jean-Yves Alejandro Frayssinhes; Fulvia Cerruti; Justine Laulin; Angela Cattaneo; Angela Bachi; Sebastien Apcher; Olivier Coux; Paolo Cascio
Journal:  Cell Mol Life Sci       Date:  2021-12-16       Impact factor: 9.261

2.  Identification of Biomarkers for Predicting Ovarian Reserve of Primordial Follicle via Transcriptomic Analysis.

Authors:  Li Liu; Biting Liu; Ke Li; Chunyan Wang; Yan Xie; Ning Luo; Lian Wang; Yaoqi Sun; Wei Huang; Zhongping Cheng; Shupeng Liu
Journal:  Front Genet       Date:  2022-05-25       Impact factor: 4.772

3.  Structures and implications of TBP-nucleosome complexes.

Authors:  Haibo Wang; Le Xiong; Patrick Cramer
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-27       Impact factor: 11.205

4.  Identification of global alternative splicing and sex-specific splicing via comparative transcriptome analysis of gonads of Chinese tongue sole ( Cynoglossus semilaevis).

Authors:  Yi-Fang Lu; Qian Liu; Kai-Qiang Liu; Hong-Yan Wang; Cheng-Hua Li; Qian Wang; Chang-Wei Shao
Journal:  Zool Res       Date:  2022-05-18

Review 5.  What defines the maternal transcriptome?

Authors:  László Tora; Stéphane D Vincent
Journal:  Biochem Soc Trans       Date:  2021-11-01       Impact factor: 5.407

6.  The SAGA core module is critical during Drosophila oogenesis and is broadly recruited to promoters.

Authors:  Jelly H M Soffers; Sergio G-M Alcantara; Xuanying Li; Wanqing Shao; Christopher W Seidel; Hua Li; Julia Zeitlinger; Susan M Abmayr; Jerry L Workman
Journal:  PLoS Genet       Date:  2021-11-22       Impact factor: 5.917

7.  Flexible analysis of TSS mapping data and detection of TSS shifts with TSRexploreR.

Authors:  Robert A Policastro; Daniel J McDonald; Volker P Brendel; Gabriel E Zentner
Journal:  NAR Genom Bioinform       Date:  2021-06-01

Review 8.  The expression, function, and utilization of Protamine1: a literature review.

Authors:  Shengnan Ren; Xuebo Chen; Xiaofeng Tian; Dingquan Yang; Yongli Dong; Fangfang Chen; Xuedong Fang
Journal:  Transl Cancer Res       Date:  2021-11       Impact factor: 1.241

9.  Tensor-Decomposition-Based Unsupervised Feature Extraction in Single-Cell Multiomics Data Analysis.

Authors:  Y-H Taguchi; Turki Turki
Journal:  Genes (Basel)       Date:  2021-09-18       Impact factor: 4.096

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.