| Literature DB >> 33350072 |
Ryo Ariyasu1, Ken Uchibori1, Hironori Ninomiya2,3, Shinsuke Ogusu1, Ryosuke Tsugitomi1, Ryo Manabe1, Hiroaki Sakamaoto1, Takehiro Tozuka1, Hiroshi Yoshida1, Yoshiaki Amino1, Satoru Kitazono1, Noriko Yanagitani1, Kengo Takeuchi2,3, Makoto Nishio1.
Abstract
BACKGROUND: The usefulness of the Oncomine Dx Target test (Oncomine Dx), a next-generation sequencing (NGS) test, has already been proven in clinical trials. However, NGS requires high-quality tumor samples and takes a long time to generate results. The feasibility of NGS for use in advanced non-small cell lung cancer (NSCLC) patients in clinical practice has not yet been determined.Entities:
Keywords: ALK-immunohistochemistry; Cobas EGFR mutation test; Oncomine Dx Target test; real-world analysis; turnaround time
Year: 2020 PMID: 33350072 PMCID: PMC7882378 DOI: 10.1111/1759-7714.13786
Source DB: PubMed Journal: Thorac Cancer ISSN: 1759-7706 Impact factor: 3.500
Figure 1The flowchart of each diagnostic method.
Patient characteristics of FAS and IPS of each companion diagnostic (CDx)
| Total (FAS) | ALK IHC (IPS) | Cobas EGFR (IPS) | Oncomine Dx (IPS) | |
|---|---|---|---|---|
|
|
|
|
| |
| Age (median, range) | 68 (40–84) | 67 (40–84) | 68 (40–84) | 67 (40–84) |
| Sex (male/female) | 108/59 | 92/50 | 106/49 | 90/44 |
| Smoking status (never/ex‐current) | 49/118 | 40/102 | 46/109 | 39/95 |
| Stage (I/II/III/IV/Rec) | 1/6/34/88/38 | 1/5/25/76/35 | 1/6/28/83/37 | 1/4/27/73/29 |
| Pathology (Ad/Sq/other) | 113/39/15 | 102/29/11 | 108/32/15 | 91/29/14 |
| Diagnostic procedure | ||||
| TBB | 81 | 71 | 75 | 64 |
| EBUS‐TBNA | 19 | 16 | 18 | 14 |
| CTNB | 14 | 9 | 12 | 13 |
| Surgical resection | 49 | 43 | 47 | 40 |
| Others | 4 | 3 | 3 | 3 |
Ad, adenoma; CTNB, computed tomography (CT)‐guided needle biopsy; EBUS‐TBNA, endobronchial ultrasound‐guided transbronchial needle aspiration; Sq, squamous; TBB, transbronchial biopsy.
IPS/FAS, CCS/FAS, MPS/FAS, CCS/PPS and TAT of each companion diagnostic (CDx)
| ALK IHC | Cobas EGFR | Oncomine Dx | |
|---|---|---|---|
| IPS/FAS | 142/167 (85.0%) | 155/167 (92.8%) | 134/167 (80.2%) |
| CCS/FAS | 137/167 (80.2%) | 154/167 (92.2%) | 110/167 (65.9%) |
| MPS/FAS | 4/167 (2.4%) | 42/167 (25.1%) | 63/167 (37.7%) |
| TAT (days) median range | 1, 1–3 | 6, 5–18 | 13, 9–29 |
| CCS/PPS | 137/137 (100%) | 154/155 (99.4%) | 110/120 (91.7%) |
| MPS for | 4/167 (2.4%) | −/− | 5/167 (3.0%) |
| MPS for | −/− | 42/167 (25.1%) | 25/167 (15.0%) |
| Other gene MPS/FAS | −/− | −/− | 33/167 (19.8%) |
CCS, per‐completed CDx set; FAS, full analysis set; IPS, intent to perform companion diagnostics (CDx) set; MPS, mutation positive set; PPS, per‐performed CDx set; TAT, turnaround time.
Concordance between each companion diagnostic (CDx)
| ALK‐IHC | |||
|---|---|---|---|
| Positive ( | Negative ( | Unknown ( | |
| Oncomine Dx | |||
| Positive ( | 4 | 1 | 0 |
| Negative ( | 0 | 94 | 15 |
| Not informative ( | 0 | 6 | 0 |
| Not performed ( | 0 | 32 | 15 |
Figure 2The case with a discordant result on ALK rearrangement. (a) The FFPE sample analyzed with Oncomine Dx (p40‐IHC positive and ALK‐IHC negative). (b) FISH using green (3′) and red (5′) ALK probes showed a negative pattern on ALK rearrangement. (c) The CT images before and after alectinib treatment. The mediastinal lymph node metastasis (#7) did not shrink after two months of alectinib treatment.
PPS/IPS and CCS/PPS of each companion diagnostic (CDx) in each biopsy procedure
| FAS | TBB (n = 81) | EBUS‐TBNA ( | CTNB ( | Surgical resection ( | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ALK IHC | Cobas EGFR | Oncomine Dx | ALK IHC | Cobas EGFR | Oncomine Dx | ALK IHC | Cobas EGFR | Oncomine Dx | ALK IHC | Cobas EGFR | Oncomine Dx | |
| IPS | 71 | 75 | 64 | 16 | 18 | 14 | 9 | 12 | 13 | 43 | 47 | 40 |
| PPS | 69 | 75 | 58 | 16 | 18 | 11 | 9 | 12 | 11 | 43 | 47 | 40 |
| CCS | 69 | 74 | 52 | 16 | 18 | 10 | 9 | 12 | 10 | 43 | 47 | 38 |
| MPS | 0 | 17 | 27 | 1 | 5 | 5 | 1 | 3 | 5 | 2 | 14 | 24 |
| PPS/IPS | 69/71 (97.2%) | 75/75 (100%) | 58/64 (90.6%) | 16/16 (100%) | 18/18 (100%) | 11/14 (78.6%) | 9/9 (100%) | 12/12 (100%) | 11/13 (84.6%) | 43/43 (100%) | 47/47 (100%) | 40/40 (100%) |
| CCS/PPS | 69/69 (100%) | 74/75 (98.7%) | 52/58 (89.7%) | 16/16 (100%) | 18/18 (100%) | 10/11 (90.9%) | 9/9 (100%) | 12/12 (100%) | 10/11 (90.9%) | 43/43 (100%) | 47/47 (100%) | 38/40 (95.0%) |
|
| 0/81 (0%) | 1/81 (1.2%) | 1/19 (5.3%) | 1/19 (5.3%) | 1/14 (7.1%) | 1/14 (7.1%) | 2/49 (4.1%) | 2/49 (4.1%) | ||||
|
| 17/81 (21.0%) | 12/81 (14.8%) | 5/19 (26.3%) | 2/19 (10.5%) | 3/14 (21.4%) | 2/14 (14.3%) | 14/49 (28.6%) | 7/49 (14.3%) | ||||
| Other gene MPS/FAS | 14/81 (17.3%) | 2/19 (10.5%) | 2/14 (14.3%) | 13/49 (26.5%) | ||||||||
CCS, per‐completed CDx set; FAS, full analysis set; IPS, intent to perform companion diagnostics (CDx) set; MPS, mutation positive set; PPS, per‐performed CDx set.