Literature DB >> 33349678

Community-led, integrated, reproducible multi-omics with anvi'o.

A Murat Eren1,2,3,4, Evan Kiefl5,6, Alon Shaiber5,6, Iva Veseli5,6, Samuel E Miller5, Matthew S Schechter5,7, Isaac Fink5, Jessica N Pan5, Mahmoud Yousef5, Emily C Fogarty5,7, Florian Trigodet5, Andrea R Watson5,7, Özcan C Esen5, Ryan M Moore8, Quentin Clayssen9, Michael D Lee10,11, Veronika Kivenson12, Elaina D Graham13, Bryan D Merrill14, Antti Karkman15, Daniel Blankenberg16,17, John M Eppley18, Andreas Sjödin19, Jarrod J Scott20, Xabier Vázquez-Campos21, Luke J McKay22,23, Elizabeth A McDaniel24, Sarah L R Stevens25,26, Rika E Anderson27, Jessika Fuessel5, Antonio Fernandez-Guerra28, Lois Maignien29,30, Tom O Delmont31, Amy D Willis32.   

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Year:  2021        PMID： 33349678      PMCID： PMC8116326          DOI： 10.1038/s41564-020-00834-3

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN： 2058-5276            Impact factor:   17.745


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  70 in total

Review 1.  tRNA modification dynamics from individual organisms to metaepitranscriptomics of microbiomes.

Authors:  Wen Zhang; Marcus Foo; A Murat Eren; Tao Pan
Journal:  Mol Cell       Date:  2022-01-14       Impact factor: 17.970

2.  Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean.

Authors:  Tom O Delmont
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-16       Impact factor: 11.205

3.  Dominance of Sulfurospirillum in Metagenomes Associated with the Methane Ice Worm (Sirsoe methanicola).

Authors:  Shen Jean Lim; Luke R Thompson; Craig M Young; Terry Gaasterland; Kelly D Goodwin
Journal:  Appl Environ Microbiol       Date:  2022-07-12       Impact factor: 5.005

4.  Within-host evolution of a gut pathobiont facilitates liver translocation.

Authors:  Yi Yang; Mytien Nguyen; Varnica Khetrapal; Nicole D Sonnert; Anjelica L Martin; Haiwei Chen; Martin A Kriegel; Noah W Palm
Journal:  Nature       Date:  2022-07-13       Impact factor: 69.504

5.  Complete gammaproteobacterial endosymbiont genome assembly from a seep tubeworm Lamellibrachia satsuma.

Authors:  Ajit Kumar Patra; Yong Min Kwon; Youngik Yang
Journal:  J Microbiol       Date:  2022-08-01       Impact factor: 2.902

6.  A single, peri-operative antibiotic can persistently alter the post-operative gut microbiome after Roux-en-Y gastric bypass.

Authors:  Deemantha G Fernando; Fatima L Saravia; Samantha N Atkinson; Matthew Barron; John R Kirby; Tammy L Kindel
Journal:  Surg Endosc       Date:  2022-06-29       Impact factor: 3.453

7.  mOTUpan: a robust Bayesian approach to leverage metagenome-assembled genomes for core-genome estimation.

Authors:  Moritz Buck; Maliheh Mehrshad; Stefan Bertilsson
Journal:  NAR Genom Bioinform       Date:  2022-08-15

8.  Viruses direct carbon cycling in lake sediments under global change.

Authors:  Lucas P P Braga; Chloé Orland; Erik J S Emilson; Amelia A Fitch; Helena Osterholz; Thorsten Dittmar; Nathan Basiliko; Nadia C S Mykytczuk; Andrew J Tanentzap
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-07       Impact factor: 12.779

9.  Ecology and molecular targets of hypermutation in the global microbiome.

Authors:  Simon Roux; Blair G Paul; Sarah C Bagby; Stephen Nayfach; Michelle A Allen; Graeme Attwood; Ricardo Cavicchioli; Ludmila Chistoserdova; Robert J Gruninger; Steven J Hallam; Maria E Hernandez; Matthias Hess; Wen-Tso Liu; Tim A McAllister; Michelle A O'Malley; Xuefeng Peng; Virginia I Rich; Scott R Saleska; Emiley A Eloe-Fadrosh
Journal:  Nat Commun       Date:  2021-05-24       Impact factor: 14.919

10.  Description of Pseudoclavibacter triregionum sp. nov. from human blood and Pseudoclavibacter albus comb. nov., and revised classification of the genus Pseudoclavibacter: proposal of Caespitibacter gen. nov., with Caespitibacter soli comb. nov. and Caespitibacter caeni comb. nov.

Authors:  Peter Vandamme; Charlotte Peeters; Helena M B Seth-Smith; Hanna Schmid; Margo Cnockaert; Adrian Egli; Daniel Goldenberger
Journal:  Antonie Van Leeuwenhoek       Date:  2022-02-02       Impact factor: 2.271
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