Literature DB >> 33347406

Multi-task multi-domain learning for digital staining and classification of leukocytes.

Agnieszka Tomczak, Slobodan Ilic, Gaby Marquardt, Thomas Engel, Frank Forster, Nassir Navab, Shadi Albarqouni.   

Abstract

This paper addresses digital staining and classification of the unstained white blood cell images obtained with a differential contrast microscope. We have data coming from multiple domains that are partially labeled and partially matching across the domains. Using unstained images removes time-consuming staining procedures and could facilitate and automatize comprehensive diagnostics. To this aim, we propose a method that translates unstained images to realistically looking stained images preserving the inter-cellular structures, crucial for the medical experts to perform classification. We achieve better structure preservation by adding auxiliary tasks of segmentation and direct reconstruction. Segmentation enforces that the network learns to generate correct nucleus and cytoplasm shape, while direct reconstruction enforces reliable translation between the matching images across domains. Besides, we build a robust domain agnostic latent space by injecting the target domain label directly to the generator, i.e., bypassing the encoder. It allows the encoder to extract features independently of the target domain and enables an automated domain invariant classification of the white blood cells. We validated our method on a large dataset composed of leukocytes of 24 patients, achieving state-of-the-art performance on both digital staining and classification tasks.

Entities:  

Year:  2020        PMID: 33347406     DOI: 10.1109/TMI.2020.3046334

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  2 in total

1.  Guest Editorial Annotation-Efficient Deep Learning: The Holy Grail of Medical Imaging.

Authors:  Nima Tajbakhsh; Holger Roth; Demetri Terzopoulos; Jianming Liang
Journal:  IEEE Trans Med Imaging       Date:  2021-09-30       Impact factor: 11.037

2.  A weakly supervised deep learning approach for label-free imaging flow-cytometry-based blood diagnostics.

Authors:  Corin F Otesteanu; Martina Ugrinic; Gregor Holzner; Yun-Tsan Chang; Christina Fassnacht; Emmanuella Guenova; Stavros Stavrakis; Andrew deMello; Manfred Claassen
Journal:  Cell Rep Methods       Date:  2021-10-25
  2 in total

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