Literature DB >> 33345189

Utilization of Time Series Tools in Life-sciences and Neuroscience.

Harshit Gujral1, Ajay Kumar Kushwaha1, Sukant Khurana2,3.   

Abstract

Time series tools are part and parcel of modern day research. Their usage in the biomedical field; specifically, in neuroscience, has not been previously quantified. A quantification of trends can tell about lacunae in the current uses and point towards future uses. We evaluated the principles and applications of few classical time series tools, such as Principal Component Analysis, Neural Networks, common Auto-regression Models, Markov Models, Hidden Markov Models, Fourier Analysis, Spectral Analysis, in addition to diverse work, generically lumped under time series category. We quantified the usage from two perspectives, one, information technology professionals', other, researchers utilizing these tools for biomedical and neuroscience research. For understanding trends from the information technology perspective, we evaluated two of the largest open source question and answer databases of Stack Overflow and Cross Validated. We quantified the trends in their application in the biomedical domain, and specifically neuroscience, by searching literature and application usage on PubMed. While the use of all the time series tools continues to gain popularity in general biomedical and life science research, and also neuroscience, and so have been the total number of questions asked on Stack overflow and Cross Validated, the total views to questions on these are on a decrease in recent years, indicating well established texts, algorithms, and libraries, resulting in engineers not looking for what used to be common questions a few years back. The use of these tools in neuroscience clearly leaves room for improvement.
© The Author(s) 2020.

Entities:  

Keywords:  artificial neural network; auto regression; cross validated; empirical analysis; fourier analysis; hidden markov model; markov model; neuroscience; principal component analysis; pubMed; spectral analysis; stack overflow; time series

Year:  2020        PMID: 33345189      PMCID: PMC7727047          DOI: 10.1177/2633105520963045

Source DB:  PubMed          Journal:  Neurosci Insights        ISSN: 2633-1055


  67 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  A logical calculus of the ideas immanent in nervous activity. 1943.

Authors:  W S McCulloch; W Pitts
Journal:  Bull Math Biol       Date:  1990       Impact factor: 1.758

3.  Multistage principal component analysis based method for abdominal ECG decomposition.

Authors:  Robertas Petrolis; Vladas Gintautas; Algimantas Krisciukaitis
Journal:  Physiol Meas       Date:  2015-01-21       Impact factor: 2.833

4.  Regenerating time series from ordinal networks.

Authors:  Michael McCullough; Konstantinos Sakellariou; Thomas Stemler; Michael Small
Journal:  Chaos       Date:  2017-03       Impact factor: 3.642

5.  Introduction to Hidden Markov Models and Its Applications in Biology.

Authors:  M S Vijayabaskar
Journal:  Methods Mol Biol       Date:  2017

6.  Colorization Using Neural Network Ensemble.

Authors: 
Journal:  IEEE Trans Image Process       Date:  2017-08-16       Impact factor: 10.856

7.  Evaluating the Cost Effectiveness of a Suicide Prevention Campaign Implemented in Ontario, Canada.

Authors:  Michael Lebenbaum; Joyce Cheng; Claire de Oliveira; Paul Kurdyak; Juveria Zaheer; Rebecca Hancock-Howard; Peter C Coyte
Journal:  Appl Health Econ Health Policy       Date:  2020-04       Impact factor: 2.561

Review 8.  Primary surgical management of anterior pelvic organ prolapse: a systematic review, network meta-analysis and cost-effectiveness analysis.

Authors:  E Slade; C Daly; I Mavranezouli; S Dias; R Kearney; E Hasler; P Carter; C Mahoney; F Macbeth; V Delgado Nunes
Journal:  BJOG       Date:  2019-10-18       Impact factor: 6.531

9.  Detecting conversation topics in primary care office visits from transcripts of patient-provider interactions.

Authors:  Jihyun Park; Dimitrios Kotzias; Patty Kuo; Robert L Logan Iv; Kritzia Merced; Sameer Singh; Michael Tanana; Efi Karra Taniskidou; Jennifer Elston Lafata; David C Atkins; Ming Tai-Seale; Zac E Imel; Padhraic Smyth
Journal:  J Am Med Inform Assoc       Date:  2019-12-01       Impact factor: 4.497

10.  Clustering multivariate time series using Hidden Markov Models.

Authors:  Shima Ghassempour; Federico Girosi; Anthony Maeder
Journal:  Int J Environ Res Public Health       Date:  2014-03-06       Impact factor: 3.390

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