| Literature DB >> 33344065 |
Aaron Y Lee1, Cecilia S Lee1, Marian S Blazes1, Julia P Owen1, Yelena Bagdasarova1, Yue Wu1, Theodore Spaide1, Ryan T Yanagihara1, Yuka Kihara1, Mark E Clark2, MiYoung Kwon3, Cynthia Owsley2, Christine A Curcio2.
Abstract
Purpose: Delayed rod-mediated dark adaptation (RMDA) is a functional biomarker for incipient age-related macular degeneration (AMD). We used anatomically restricted spectral domain optical coherence tomography (SD-OCT) imaging data to localize de novo imaging features associated with and to test hypotheses about delayed RMDA.Entities:
Keywords: age-related macular degeneration; biomarker; deep learning; drusen; rod-mediated dark adaptation; spectral domain optical coherence tomography
Mesh:
Year: 2020 PMID: 33344065 PMCID: PMC7745629 DOI: 10.1167/tvst.9.2.62
Source DB: PubMed Journal: Transl Vis Sci Technol ISSN: 2164-2591 Impact factor: 3.283
Figure 1.Concept diagram of framework for biomarker discovery using deep learning. The overall framework is shown in (A). After aligning spectral domain optical coherence tomography (SD-OCT) images, separate datasets are created and different convolutional neural networks (CNN) deep learning models are trained (B). The frozen models with the best performance, lowest validation loss, are systematically perturbed with mean occlusion in the test set and perturbations increasing and decreasing the predictions are shown in green and red, respectively (C).
Patient Characteristics
| Training | Validation | Test | Total | |
|---|---|---|---|---|
| Patients, | 424 | 148 | 143 | 715 |
| Gender, | ||||
| Male | 147 | 57 | 56 | 260 |
| Female | 277 | 91 | 87 | 455 |
| Race | ||||
| White | 405 | 145 | 130 | 680 |
| African American | 15 | 3 | 15 | 28 |
| Asian | 2 | 0 | 1 | 3 |
| Other | 2 | 0 | 2 | 4 |
| Eyes, | 436 | 154 | 147 | 737 |
| SD-OCT volumes, | 711 | 254 | 253 | 1218 |
| Age, mean (SD) | 70.9 (6.4) | 71.0 (6.3) | 71.5 (6.2) | 71.0 (6.3) |
| AREDS (Grade) Category, | ||||
| Normal (1) | 482 | 170 | 173 | 825 |
| Early (2–4) | 167 | 70 | 57 | 294 |
| Intermediate (5–8) | 47 | 13 | 19 | 79 |
| Advanced (9–11) | 15 | 1 | 4 | 20 |
| Rod intercept time minutes, mean (SD) | 13.2 (9.0) | 12.9 (8.4) | 13.3 (10.3) | 13.1 (9.2) |
Demographic information and age-related macular degeneration disease severity of study participants.
AREDS, Age-Related Eye Disease Study; SD, standard deviation; SD-OCT, spectral domain optical coherence tomography.
Figure 2.Performance of deep learning models by anatomic location. Training curves for two different anatomic locations (blue and orange curves) (A) by root mean standard error (RMSE) and mean absolute error (MAE); shaded region shows 95% confidence intervals by repeated training sessions. The anatomic positions are indicated by the two dotted lines of corresponding color in panel (B). Lowest error on foveal B-scan by millimeters eccentricity and RMSE loss with lower being higher performance B. The fovea is labeled with the white arrow.
Figure 3.Visualization of deep learning features from the test set. The original spectral domain optical coherence tomography (SD-OCT) scan in mm used by the deep learning model to predict rod intercept time (RIT) are shown in (A, D, G). Panels (B, E, H) show the magnitude of the difference between the perturbed and baseline predictions caused by occlusion of each possible pixel position, with red showing elongation and blue showing shortening of the RIT. The corresponding overlays are shown in (C, F, I) in relation to the ellipsoid zone (EZ).
Figure 4.Correlation of hyporeflective bands with rod intercept time (RIT). Panel (A) shows a reference image of the external limiting membrane (ELM), the ellipsoid zone (EZ), the interdigitation zone (IZ), and the retinal pigment epithelium-Bruch's membrane (RPE-BrM) on spectral domain optical coherence tomography (SD-OCT). Three examples of low RIT (B), medium RIT (C), and high RIT (D) sampled randomly from the test set are shown with high resolution insets (red boxes) and the RIT in minutes. The IZ, which is apparent in the reference figure (also from this population), is not apparent in any of the randomly sampled figures. Further the gap between the RPE-BrM and the EZ is more hyper-reflective in C, D than in B. Blurring of hyporeflective bands superficial and deep to the EZ correlates with RIT.