Yayoi Otsuka-Yamasaki1, Osamu Inanami2, Haruka Shino1, Reeko Sato1, Masahiro Yamasaki1. 1. Cooperative of Department of Veterinary Medicine, Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550, Japan. 2. Department of Veterinary Medicine, Graduate School of Veterinary Medicine, Hokkaido University, Sapporo, Hokkaido 060-0818, Japan.
Abstract
Hereditary methemoglobinemia associated with nicotinamide adenine dinucleotide-cytochrome b5 reductase (b5R) deficiency is a rare autosomal recessive disorder in animals. Recently, nonsynonymous b5R gene (CYB5R3) variants have been reported to be associated with canine and feline hereditary methemoglobinemia. However, the underlying molecular mechanisms of canine and feline methemoglobinemia caused by these nonsynonymous variants have not yet been reported. Previously, we reported a Pomeranian dog family with hereditary methemoglobinemia, carrying CYB5R3 mutation of an A>C transition at codon 194 in exon 7, replacing an isoleucine residue with leucine (p.Ile194Leu). In this study, we investigated the enzymatic and structural properties of the soluble form of wild-type and Ile194Leu canine b5Rs to characterize the effects of this missense mutation. Our results showed that the kinetic properties of the mutant enzyme were not affected by this amino acid substitution. The secondary structure of the wild-type and Ile194Leu b5Rs detected by circular dichroism showed a similar pattern. However, the mutant enzyme exhibited decreased heat stability and increased susceptibility to trypsin hydrolysis. Moreover, the thermostability and unfolding measurements indicated that the mutant enzyme was more sensitive to temperature-dependent denaturation than the wild-type b5R. We concluded from these results that unstable mutant enzyme properties with normal enzymatic activity would be associated with hereditary methemoglobinemia in the Pomeranian dog family.
Hereditary methemoglobinemia associated with nicotinamide adenine dinucleotide-cytochrome b5 reductase (b5R) deficiency is a rare autosomal recessive disorder in animals. Recently, nonsynonymous b5R gene (CYB5R3) variants have been reported to be associated with canine and feline hereditary methemoglobinemia. However, the underlying molecular mechanisms of canine and feline methemoglobinemia caused by these nonsynonymous variants have not yet been reported. Previously, we reported a Pomeranian dog family with hereditary methemoglobinemia, carrying CYB5R3 mutation of an A>C transition at codon 194 in exon 7, replacing an isoleucine residue with leucine (p.Ile194Leu). In this study, we investigated the enzymatic and structural properties of the soluble form of wild-type and Ile194Leucanineb5Rs to characterize the effects of this missense mutation. Our results showed that the kinetic properties of the mutant enzyme were not affected by this amino acid substitution. The secondary structure of the wild-type and Ile194Leub5Rs detected by circular dichroism showed a similar pattern. However, the mutant enzyme exhibited decreased heat stability and increased susceptibility to trypsin hydrolysis. Moreover, the thermostability and unfolding measurements indicated that the mutant enzyme was more sensitive to temperature-dependent denaturation than the wild-type b5R. We concluded from these results that unstable mutant enzyme properties with normal enzymatic activity would be associated with hereditary methemoglobinemia in the Pomeranian dog family.
Hereditary methemoglobinemia characterized by the deficiency of nicotinamide adenine
dinucleotide (NADH)-cytochrome b5 reductase (b5R) (EC.1.6.2.2) is an autosomal recessive
disorder [9, 15].
This enzyme transfers electrons from NADH to cytochrome b5 using flavin adenine dinucleotide
(FAD) during the reduction of methemoglobin (metHb) [26]. There are two forms of b5R: a membrane-bound form, expressed in the mitochondria
and endoplasmic reticulum of the somatic cells, and a membrane anchor domain-lacking soluble
form, expressed only in erythrocytes [9, 15]. Both forms are encoded by the cytochrome b5 reductase
gene (CYB5R3) [15].In humans, more than 40 CYB5R3 variants have been reported to cause
hereditary methemoglobinemia [15] with two distinct
manifestations of the clinical condition: type I and type II [9, 15]. Type I, limited to erythrocyte
defects, is related to the soluble b5R form, is relatively benign, and primarily manifests as
cyanosis [9, 15].
Type II disease, caused by the defects in the membrane-bound b5R form, is much more severe,
resulting in cyanosis, neurological dysfunction, and premature death [9, 15].In contrast, b5Rdeficiency-associated hereditary methemoglobinemia has rarely been reported
in animals [3, 6,
7, 19]. In the
past few years, innovations in massively parallel DNA sequencing have made this approach a
cost-effective tool for diagnosing heritable diseases in veterinary medicine, contributing to
the identification of nonsynonymous CYB5R3 variants both in dogs [11] and cats [12,
19]. To date, no information has been available
regarding the underlying molecular mechanisms of hereditary methemoglobinemia in veterinary
medicine. Recently, we observed an instance of familial hereditary methemoglobinemia in
Pomeranian dogs in Japan and identified the causative missense variant (c.580A>C) in canineCYB5R3 [17]. The same mutation
allele was found in a Pomeranian dog in Australia [27].
This variant resulted in the replacement of an isoleucine (Ile) residue with leucine (Leu) at
amino acid position 194 (p.Ile194Leu) [17]. Dogs
homozygous for this missense variant exhibited significantly higher metHb concentrations and
lower b5R activities than their healthy counterparts [17]. These findings imply that the c.580A>C variant in canineCYB5R3 could affect b5R function in erythrocytes, but the precise effector
mechanism of this process remains unclear.As described previously, in the predicted three-dimensional (3-D) model of soluble canineb5R, Ile194 corresponded to a residue located in the first α-helix of the NADH-binding domain
at the posterior region of the NADH-binding motif [17].
Although it was suspected that Ile194 binds with a valine residue at the position 190 (Val190)
via hydrogen bonding to maintain the spiral conformation of the α-helix, Ile194Leu replacement
did not affect the hydrogen bonding with Val190 [17].
Furthermore, some in silico algorithms predicted that canineIle194Leub5R
would likely be tolerated without functionally damaging the enzyme [17].It is well-known that isoleucine and leucine are structural isomers and differ only in the
position of a branching methyl group in the side chain [20]. During the comparison of homologous proteins, such changes between members of a
group of amino acids with similar characteristics are often overlooked [24]. Thus, further analysis of Ile194Leub5R would be required to fully
elucidate the underlying molecular mechanisms of the observed clinical manifestations. In this
study, we aimed to characterize the mutant enzyme by constructing wild-type and mutant
Ile194Leucanineb5R recombinant proteins in their soluble form and analyzing their
biochemical and structural properties.
MATERIALS AND METHODS
RNA isolation and reverse transcription polymerase chain reaction
A bone marrow sample from a Jack Russell Terrier without methemoglobinemia, visiting the
Veterinary Teaching Hospital at Iwate University for bone marrow examination, was
collected with the informed consent of the dog owner. The sample extraction was performed
under general anesthesia achieved by the administration of 2% inhaled isoflurane. Total
RNA was extracted using the RNeasy Mini Kit (Qiagen, Hilden, Germany). Complementary DNA
(cDNA) was synthesized from 1 µg of total RNA template using the ReverTra-plus-TM cDNA
synthesis kit (Toyobo, Osaka, Japan) according to the manufacturer’s protocol.
Polymerase chain reaction (PCR) amplification of the canine b5R wild-type and
Ile194Leu soluble domains
To generate the wild-type canineb5R soluble domain, the open reading frame corresponding
to a methionine residue at the position 24 from a phenylalanine (Phe) at the position 301
was isolated by PCR amplification of the first-strand cDNA obtained as described above.
The primers, listed in Table 1, were designed based on the published sequence of the gene encoding
Canis familiariscyb5r3 (Gene ID: 474479). The primers F1 and R1
included BamHI and EcoRI restriction sites, respectively
(Table 1). PCR amplification of the
wild-type b5R was performed using primers F1 and R1 following the manufacturer’s protocol
(Platinum Taq DNA polymerase, Thermo Fisher Scientific, Waltham, MA,
USA). The reaction conditions were as follows: initial denaturation for 15 sec at 94°C,
followed by 35 cycles of 15 sec at 94°C, 30 sec at 55°C, and 1 min at 68°C. The PCR
product was verified by visualization in 1.0% agarose gel and purified using a commercial
kit (Isospin PCR product, Nippon Gene, Toyoma, Japan). The purified wild-type PCR fragment
(850 bp) was cloned into a pMD20-T vector (Takara Bio, Kusatsu, Japan).
Table 1.
Oligonucleotide primers used to construct DNA fragments of the canine
nicotinamide adenine dinucleotide-cytochrome b5 reductase soluble forms
Primer
Sequence
F1
5′-GGATCCATGAAGCTGTTCCAG-3′
R1
5′-GAATTCTCAGAAGGCGAAGCAG-3′
F2
5′-GATCCGTGCCCTCATCAAAG-3′
R2
5′-CTTTGATGAGGGCACGGATC-3′
The F1 and R1 primers included BamHI (italic) and
EcoRI (underlined) restriction sites, respectively. The F2 and R2
primers included the mutation site in bold.
The F1 and R1 primers included BamHI (italic) and
EcoRI (underlined) restriction sites, respectively. The F2 and R2
primers included the mutation site in bold.To generate the mutant enzyme with the codon 194 missense mutation, Ile194Leub5R, two
amplified fragments were generated using the primer pairs F1 and R2 or F2 and R1, using
the first-strand cDNA obtained as described above. The primers F2 and R2 included the
missense mutation to generate c.580A>C in CYB5R3 (Table 1). The reaction conditions were as described above. PCR
products were verified by visualization on a 1.0% agarose gel and purified. To combine and
extend the 5′- and 3′-ends of amplified fragments, these were mixed at an equal volume and
used as a template for a second PCR using primers F1 and R1. After electrophoresis, the
second PCR product (850 bp) was purified and cloned into the pMD20-T vector as described
above.The Escherichia coli DH5α strain was transformed with each recombinant
vector, pMD20-T-wild-type, and -Ile194Leub5R. Selected clones were sequenced using M13 RV
or M4 primers and a 3500 Genetic Analyzer device following the Big Dye terminator protocol
(Applied Biosystems, Foster City, CA, USA).
Glutathione S-transferase (GST)-tagged b5R expression, purification, and
characterization
To construct the GST-tagged b5R expression vector, pMD20-T-wild-type and -Ile194Leub5R
were digested with BamHI and EcoRI as described above.
The resulting fragments were ligated separately into the GST fusion gene vector, pGEX-6P-1
(GE Healthcare, Chicago, IL, USA) using the Mighty Mix Ligation Kit (Takara). E.
coli BL21 bacteria harboring the expression plasmid were incubated overnight at
37°C in 50 ml of Luria-Bertani (LB) medium containing 100 µg/ml ampicillin. The culture
was inoculated into 500 ml of LB and incubated at 37°C. After an initial incubation for
2.5 hr, isopropyl-β-D-thiogalactopyranoside was added to the medium (at a final
concentration of 0.1 mM) and incubated for another 4 hr. The bacterial cells were pelleted
by centrifugation (12,000 × g for 5 min), resuspended, and lysed in 50 ml
CelLytic B Reagent with lysozyme (0.2 mg/ml), benzonase (50 U/ml), and protease inhibitor
(all reagents purchased from Sigma-Aldrich Co., St. Louis, MO, USA), and spun at full
speed in a microcentrifuge for 10 min to pellet insoluble materials. The supernatant was
diluted with the same volume of phosphate-buffered saline (PBS, pH=7.4), transferred onto
a Glutathione Sepharose 4 FF Column (GE Healthcare), and mixed gently at room temperature
(20–25°C) for 10 min to ensure the optimal binding of the GST-tagged proteins to the
glutathione Sepharose 4FF matrix. After washing the column twice with PBS, the recombinant
proteins were cleaved using PreScission protease (GE Healthcare). Elution was performed
with the elution buffer according to the manufacturer’s protocol. The recombinant proteins
were then dialyzed to PBS overnight at 4°C and stored at −80°C until further use. The
purity of the recombinant b5Rs was evaluated by electrophoresis on a polyacrylamide gel
(10%) in the presence of sodium dodecyl sulfate (SDS). The enzyme concentrations were
determined using the Bradford method.
Recombinant b5R protein enzymatic property analysis
To assess steady-state kinetic parameters, the NADH-ferricyanide reductase assay was
performed at 340 nm and 25°C using a GENESYS VIS spectrophotometer (Thermo Scientific) as
described previously [13] with slight
modifications. Briefly, the NADH-ferricyanide activity was measured in 100 mM Tris-HCl,
0.5 mM ethylenediaminetetraacetic acid buffer (pH=8.0) with 0.2 mM NADH and 0.5 mM
potassium ferricyanide. The reaction was initiated by the addition of NADH or enzymes. To
calculate the kinetic parameters, change in absorbance was assessed as per the variations
in NADH and potassium ferricyanide concentrations, and the activity was calculated using
6.25 and 1.02 cm−1 mM−1 as the molar extinction coefficients,
respectively. The assays were performed in triplicate. The Km and
Vmax values of each enzyme were calculated using GraphPad Prism
software (http://www.graphpad.com/scientific-software/prism/). The Kcat
values were calculated by dividing the Vmax by the enzyme concentration,
which was determined based on a molecular mass of 32,000 Da. The significance of the
differences was evaluated using Student’s t-test.
Heat inactivation and protease stability analysis
To evaluate protein stability, the residual activity was measured after incubating the
wild-type and Ile194Leub5Rs at various temperatures (0–60°C) for 10 min, and at 42°C and
50°C for different periods (0–60 min). The residual activity was expressed as a percentage
of the activity of the same enzyme before treatment. T was
defined as the temperature at which 50% of the initial activity before heat treatment was
retained and was calculated from data at various temperatures (0–60°C) for 10 min. In
addition, the activities of wild-type and Ile194Leub5Rs were measured after incubation at
37°C for 3, 24, and 48 hr. To evaluate the folding status of proteins, trypsin
susceptibility was examined by incubating for various periods (0–60 min) at 37°C with 1 µg
of trypsin (Sigma-Aldrich Co.) per 50 µg of wild-type or mutant enzyme, following the
manufacturer’s instructions. The activity of the treated enzyme was evaluated using the
NADH-ferricyanide reductase activity as described above. The significance of the
differences was evaluated using Student’s t-test.
The secondary structure of the recombinant proteins was spectroscopically evaluated by CD
using a spectropolarimeter (Jasco J-820, JASCO Ltd., Tokyo, Japan). Far-UV (200–250 nm)
and near-UV (250–300 nm) CD spectra of wild-type and Ile194Leub5Rs were obtained at 1-nm
intervals using protein concentrations of 0.11 and 0.13 mg/ml, respectively, in PBS. The
CD spectra were measured at 25°C. The magnitude of the CD spectra was expressed as molar
ellipticity [θ], deg·cm2/dmol, based on the molecular weight of b5R (32,000
Da).The thermostability and unfolding of the wild-type and Ile194Leub5Rs were determined
according to the changes in the CD signal at 222 nm using temperature scans ranging from
10 to 80°C, increasing at the rate of 1°C/min. The wild-type and Ile194Leub5Rs were
suspended in PBS at protein concentrations of 0.27 and 0.23 mg/ml, respectively. The
fraction at which 50% of the total protein was folded and unfolded was determined as the
Tm (melting temperature midpoint of the transition) value, and was
calculated for both wild-type and mutant b5Rs using the JWTDA-488 software (JASCO
Ltd.).
RESULTS
Fusion-expressed b5R protein preparation and identification
To characterize the effect of the Ile194Leu missense mutation on the biochemical
properties of the soluble b5R form, the wild-type and mutant b5R coding regions were
separately inserted into a GST fusion gene expression vector. Recombinant wild-type and
Ile194Leub5Rs were expressed in E. coli BL21 bacteria and purified as
described in the “Materials and Methods” section. Electrophoresis on a polyacrylamide gel
in the presence of SDS demonstrated that single bands of 32,000 Da were present after
purification, in good agreement with the theoretical mass of the soluble wild-type and
Ile194Leub5R forms (Fig. 1).
Fig. 1.
Sodium dodecyl sulfate polyacrylamide gel electrophoresis of the canine
nicotinamide adenine dinucleotide-cytochrome b5 reductase (b5R) soluble-forms. M,
size marker; Lane 1, wild-type; Lane 2, mutant b5R. Single bands at 32,000 Da were
observed after purification, in good agreement with the theoretical mass of the
recombinant soluble-form wild-type and mutant b5Rs.
Sodium dodecyl sulfatepolyacrylamide gel electrophoresis of the caninenicotinamide adenine dinucleotide-cytochrome b5 reductase (b5R) soluble-forms. M,
size marker; Lane 1, wild-type; Lane 2, mutant b5R. Single bands at 32,000 Da were
observed after purification, in good agreement with the theoretical mass of the
recombinant soluble-form wild-type and mutant b5Rs.
Steady-state kinetic properties of the expressed enzymes
Kinetic analysis was performed using the soluble-form canineb5R wild-type and Ile194Leu
recombinant proteins. The enzymatic activity of the mutant b5R was almost identical to
that of the wild-type enzyme when measured under standard assay conditions. The kinetic
properties of the wild-type and mutant enzymes are summarized in Table 2. The Km and the Kcat/Km values of the
mutant b5R for NADH were 81% and 138% of the wild-type, and the Kcat
value of mutant b5R was almost the same as that of wild-type b5R. Meanwhile, the
Km, Kcat and Kcat/Km values in the
mutant b5R for ferricyanide were 147%, 132% and 78% of the wild-type, respectively. In all
parameters, however, there was no statistically significant difference between the
wild-type and the mutant proteins, suggesting that the b5R catalytic efficiency was not
affected by the Ile194Leu replacement.
Table 2.
The kinetic properties of the canine nicotinamide adenine
dinucleotide-cytochrome b5 reductase soluble forms
Wild-type
Mutant
P value
Km [NADH]
µM
13.8 ± 2.4
11.2 ± 6.5
0.497
Kcat
S-1
455.8 ± 143.1
466.8 ± 161.9
0.922
Kcat/Km
S-1M-1
3.4 ± 1.2 × 107
4.7 ± 1.7 × 107
0.277
Km [ferricyanide]
µM
14.5 ± 8.8
21.3 ± 2.6
0.271
Kcat
S-1
279.9 ± 52.7
369.8 ± 56.7
0.114
Kcat/Km
S-1M-1
2.3 ± 0.8 × 107
1.8 ± 0.4 × 107
0.413
The measurement of the nicotinamide adenine dinucleotide (NADH)-ferricyanide
activity were performed in triplicates. Data are represented as mean ± standard
deviation. The significance of the differences was evaluated using the Student’s
t-test.
The measurement of the nicotinamide adenine dinucleotide (NADH)-ferricyanide
activity were performed in triplicates. Data are represented as mean ± standard
deviation. The significance of the differences was evaluated using the Student’s
t-test.
Structural characterization of the wild-type and mutant b5Rs
The secondary structures of wild-type and Ile194Leub5Rs were evaluated by CD analysis in
the far- and near-UV regions. As shown in Fig.
2, in the far-UV region, the Ile194Leub5R exhibited CD spectra comparable to those
of the wild-type b5R, with positive and negative CD maxima in the ranges of 195–199 nm and
219–222 nm, respectively, consistent with the α-helix-rich structure. The molar
ellipticity [θ] of the wild-type and Ile194Leub5Rs at 222 nm were −5,138.59 and −4,533.98
deg·cm2/dmol, respectively (Fig.
2). The patterns and intensities of the CD spectra for both b5Rs were comparable,
indicating that Ile194Leu replacement did not significantly alter the secondary enzyme
structure.
Fig. 2.
Steady-state circular dichroism (CD) spectra of the canine nicotinamide adenine
dinucleotide-cytochrome b5 reductase (b5R) soluble-forms. The CD spectra were
expressed as molar ellipticity [θ], deg·cm2/dmol of enzyme. The protein
concentrations of the canine wild-type (blue) and mutant (pink) b5Rs were 0.11 and
0.13 mg/ml, respectively.
Steady-state circular dichroism (CD) spectra of the caninenicotinamide adenine
dinucleotide-cytochrome b5 reductase (b5R) soluble-forms. The CD spectra were
expressed as molar ellipticity [θ], deg·cm2/dmol of enzyme. The protein
concentrations of the canine wild-type (blue) and mutant (pink) b5Rs were 0.11 and
0.13 mg/ml, respectively.
Heat inactivation and protease susceptibility of the b5Rs
We observed distinct differences in the heat stability of the wild-type and Ile194Leub5Rs. The residual activity of the mutant enzyme after 10 min at 37°C and 50°C was
approximately 101% and 23.5% of the initial activity, respectively (Fig. 3A). However, the wild-type b5R retained 105% and 104% of the initial activity after
10 min at 37°C and 50°C, respectively (Fig. 3A).
The T of the I194Lb5R (46.2 ± 4.0°C) was significantly
lower (P=0.001) than that of the wild-type (55.9 ± 0.6°C). Based on these
results, we also measured the residual activity for 0, 10, 20, 30, and 60 min incubations
at 42°C and 50°C. Enzymatic activity of the wild-type strain was not altered after 60 min
of incubation at any temperature (Fig. 3B).
However, when the Ile194Leub5R was incubated under the same conditions, the activity
decreased after a 10-min incubation at each temperature, and the residual activities after
60 min of incubation were 56.7% at 42°C and 3.1% at 50°C of the initial activity,
respectively (Fig. 3B). In addition, we measured
the residual activity of the b5R enzymes after incubation at 3, 24, and 48 hr at 37°C, the
normal range of body temperature. As shown in Fig.
3C, the activity of the wild-type b5R retained its high activity up to 24 hr and
that at 48 hr was 53.4% of the initial activity. Meanwhile, the activity of Ile194Leub5R
significantly decreased after 24 and 48 hr of incubation, and the residual activities were
4.5% and 2.4% of the initial activity, respectively (Fig. 3C).
Fig. 3.
Heat stability of the canine nicotinamide adenine dinucleotide-cytochrome b5
reductase (b5R) soluble-forms. (A) The wild-type (blue) and mutant (pink) b5Rs were
incubated for 10 min at various temperatures. (B) Recombinant b5Rs were incubated at
42°C and 50°C for various periods. The green and blue lines show the values of the
wild-type b5R incubated at 42°C and 50°C, respectively. The pink and yellow lines
show the values of the mutant b5R incubated at 42°C and 50°C, respectively. (C)
Wild-type (blue) and mutant (pink) b5Rs were incubated for 3, 24, and 48 hr at 37°C.
These assays were performed in triplicate. The residual activity was expressed as a
percentage of the activity of the same enzyme before heat treatment. The points are
represented as the mean ± standard deviation. The significance of the differences
was evaluated using Student’s t-test. *P<0.05,
†P<0.01, ‡P<0.005, and
§P<0.001, compared with the values of wild-type b5R under the
same treatments.
Heat stability of the caninenicotinamide adenine dinucleotide-cytochrome b5
reductase (b5R) soluble-forms. (A) The wild-type (blue) and mutant (pink) b5Rs were
incubated for 10 min at various temperatures. (B) Recombinant b5Rs were incubated at
42°C and 50°C for various periods. The green and blue lines show the values of the
wild-type b5R incubated at 42°C and 50°C, respectively. The pink and yellow lines
show the values of the mutant b5R incubated at 42°C and 50°C, respectively. (C)
Wild-type (blue) and mutant (pink) b5Rs were incubated for 3, 24, and 48 hr at 37°C.
These assays were performed in triplicate. The residual activity was expressed as a
percentage of the activity of the same enzyme before heat treatment. The points are
represented as the mean ± standard deviation. The significance of the differences
was evaluated using Student’s t-test. *P<0.05,
†P<0.01, ‡P<0.005, and
§P<0.001, compared with the values of wild-type b5R under the
same treatments.We used trypsin to elucidate the protease sensitivity of the mutant Ile194Leub5R,
because trypsin is known to easily access and cleave loosely folded parts of proteins
[10, 14].
Consequently, the mutant b5R retained only 22.2% of its initial activity after 60 min of
incubation with trypsin at 37°C. However, the wild-type b5R exhibited a considerably
higher trypsin resistance, retaining 59.6% of its initial activity under the same
conditions (Fig. 4).
Fig. 4.
Trypsin susceptibility of the canine nicotinamide adenine dinucleotide-cytochrome
b5 reductase (b5R) soluble-forms. Wild-type (blue) and mutant (pink) b5Rs were
treated with trypsin at 37°C for various periods. The assays were performed in
triplicate. The residual activity was expressed as a percentage of the activity of
the same enzyme before the trypsin treatment. The points are represented as the mean
± standard deviation. The significance of the differences was evaluated using
Student’s t-test. *P<0.05,
†P<0.01, and ‡P<0.005, compared with the
values of wild-type b5R under the same treatments.
Trypsin susceptibility of the caninenicotinamide adenine dinucleotide-cytochrome
b5 reductase (b5R) soluble-forms. Wild-type (blue) and mutant (pink) b5Rs were
treated with trypsin at 37°C for various periods. The assays were performed in
triplicate. The residual activity was expressed as a percentage of the activity of
the same enzyme before the trypsin treatment. The points are represented as the mean
± standard deviation. The significance of the differences was evaluated using
Student’s t-test. *P<0.05,
†P<0.01, and ‡P<0.005, compared with the
values of wild-type b5R under the same treatments.
Thermostability and unfolding of the wild-type and Ile194Leu b5Rs
To gain an insight into the effects of the Ile194Leu mutation on the global structural
stability, we determined the structural changes of the Ile194Leub5R and compared them to
the structure of the wild-type enzyme using CD analysis at 222 nm under altered
temperatures. An increased temperature induced protein denaturation, demonstrating a
two-state process. For quantification, the temperature at which half of the recombinant
proteins were unfolded was defined as Tm. As shown in Fig. 5, the Tm values for the wild-type and Ile194Leub5Rs were 57.0°C
and 52.7°C, respectively, suggesting that the mutant enzyme could be more sensitive to
temperature-induced denaturation than the wild-type b5R.
Fig. 5.
Thermostability and unfolding analysis of the canine nicotinamide adenine
dinucleotide-cytochrome b5 reductase (b5R) soluble-forms. The protein concentrations
of canine wild-type (blue) and mutant (pink) b5Rs were 0.27 and 0.23 mg/ml,
respectively.
Thermostability and unfolding analysis of the caninenicotinamide adenine
dinucleotide-cytochrome b5 reductase (b5R) soluble-forms. The protein concentrations
of canine wild-type (blue) and mutant (pink) b5Rs were 0.27 and 0.23 mg/ml,
respectively.
DISCUSSION
In humanhereditary methemoglobinemia due to CYB5R3 variants, most
mutations are missense, but several premature stop codons and incorrect exon-intron splicing
mutations create truncated proteins [15]. Several
in vitro studies have shown that most missense mutant proteins exhibit
certain dysfunctionalities, including reduced catalytic activity and increased
susceptibility to heat and proteases [9, 15, 22]. However,
no missense variants affecting the Ile194 residue have been reported in humanCYB5R3.The 3-D structures of human [4], rat [5], and porcine [25] b5R were resolved by X-ray crystallography. According to these studies, in the
humanb5R the FAD cofactor was able to non-covalently adhere to the large, wide boundary
cleft between the two major domains [4, 25], whereas the NADH molecule was able to fit into the
interdomain cleft on the re-side of the FAD isoalloxazine ring [25]. Based on the observation that Ile194 is located in
the proximal region of the NADH-binding motif [16,
17], it was suspected that substrate binding would
be affected by this amino acid replacement. However, the Ile194Leu mutation did not affect
the Km for NADH when the b5R activity was measured in the presence of
ferricyanide as an electron acceptor, implying that the Ile194 residue does not play a key
role in the affinity with NADH (Table 2). In
addition, although the differences in the mean values of the other kinetics parameters were
observed between the wild-type and the Ile194Leu mutant enzymes, there was no statistically
significant difference (Table 2). These results
indicated that enzymatic function of the b5R could not affected by Ile194Leu
replacement.Concerning the reductase activities, our study showed remarkable differences in heat
stability between the Ile194Leu and wild-type enzymes (Fig. 3A and 3B). The T value for Ile194Leub5R was
9.7°C lower than that for the wild-type (Fig. 3A),
and the activity of Ile194Leub5R decreased faster than that of wild-type b5R under the same
thermal conditions (Fig. 3B). In the 3 days
incubation at 37°C, the activity of mutant b5R was significantly lower than that of
wild-type b5R (Fig. 3C). These results indicate
that the mutant b5R might be inactivated earlier in the circulating peripheral blood because
of Ile194Leu replacement. In addition, the greater susceptibility to trypsin hydrolysis of
the Ile194Leub5R relative to wild-type (Fig. 4)
suggested that the folding status of Ile194Leu was looser than that of the wild-type b5R. In
humanhereditary methemoglobinemia, it has been demonstrated that the characteristics of b5R
mutants associated with Type I disorder, p.Ala178Val [9] and p.Cys203Tyr (Ala, alanine; Cys, cysteine; Tyr, tyrosine) [22], are similar to those of Ile194Leu, including heat
instability and protease susceptibility but normal enzymatic activity (in Human Genome
Variation Society nomenclature, they have been described as p.Ala179Val and p.Cys204Tyr,
respectively, [15]). It was concluded that the
vulnerabilities of these humanb5R mutants might be caused by conformational changes owing
to amino acid substitutions [9, 22]. However, the details of this phenomenon remain unclear. Like
erythrocyte membrane aspartic proteinase, cathepsin E has been identified previously [21], and it is possible that it is involved in the early
degradation of mutant proteins. However, since we did not perform this study using cathepsin
E family, further investigation is needed.In our previous study, the predicted hydrogen bond distances between Ile194 and Val190, and
Leu194 and Val190 were 3.07 Å and 3.08 Å, respectively, when measured using the Pymol
software (data not shown), suggesting that the replacement with leucine would not alter the
structure of the first α-helix in the canine soluble b5R [17]. Consistently, the present study revealed that there was no difference between
the secondary structures of the two b5Rs (Fig. 2).
Meanwhile, the Tm value for Ile194Leub5R was 4.3°C lower than that for the
wild-type (Fig. 5). This result revealed that the
mutant protein tertiary structure could be more easily destroyed, owing to Ile194Leu
replacement, compared with that of the wild-type enzyme. Despite possessing normal enzymatic
functions, the conformational changes of the Ile194Leub5R mutant might result in metHb
accumulation in the erythrocytes of the affected dogs.MetHb normally forms at low rates of approximately 3.0% of erythrocyte hemoglobin
in vivo [7, 8], and the NADH-b5R catalytic pathway is responsible for reducing up to
95% of metHb [2]. It is well-known that the nicotine
adenine dinucleotide phosphate pathway [1] and
antioxidants, including reduced glutathione and ascorbic acid [23], are involved in metHb reduction. In vivo
comparative studies of b5R function in various mammals reported that b5R enzymatic
activities are remarkably lower in dogs and humans than in guinea pigs and rabbits [1]. According to Srivastava et al. [18], the erythrocytic concentrations of the b5R enzyme
are significantly lower in dogs than in rodents, and decreased concentrations of b5R confer
a high degree of susceptibility to metHb accumulation in dog erythrocytes [16]. Although we could not measure the concentrations of
erythrocyticb5R in the affected Pomeranian dogs in a previous study [17], dogs with unstable proteins such as the Ile194Leub5R mutant might
collapse the NADH-b5R catalytic pathway in erythrocytes.Recently, nonsynonymous CYB5R3 variants have been reported, including
p.Gly72Ser and p.Ile190Leu in dogs [11] as well as
p.Gly209Ser [12], p.Phe36Leu, and p.Tyr179His [19] in cats (Gly, glycine; Ser, serine; His, histidine).
However, the underlying molecular mechanisms of methemoglobinemia caused by nonsynonymous
variants in animals have not been completely elucidated yet. Our results provided clear
evidence of the instability of an enzyme with otherwise normal catalytic properties
resulting in hereditary methemoglobinemia in a Pomeranian dog family that carried the
CYB5R3 missense variant (ATC→CTC at codon 194, Ile194Leu). Since mature
erythrocytes cannot synthesize a new protein over a long lifespan, these results indicated
that the degradation of the unstable mutant enzyme with normal enzymatic activity might
markedly shorten the half-life of the b5R molecules and result in excessive metHb
accumulation. Further studies are necessary to clarify the above hypothesis.CONFLICT OF INTEREST. The authors declare no conflict of interest.
Authors: Eugene Y Wu; Amanda R Walsh; Emma C Materne; Emily P Hiltner; Bryan Zielinski; Bill R Miller; Lily Mawby; Erica Modeste; Carol A Parish; Wayne M Barnes; Milko B Kermekchiev Journal: Biochemistry Date: 2015-01-09 Impact factor: 3.162
Authors: Shijia Zhou; Rick Tearle; Raziallah Jafari Jozani; Bethany Winra; Olaf Schaaf; Anthony Nicholson; Anne Peaston Journal: J Vet Intern Med Date: 2019-02-14 Impact factor: 3.333