Literature DB >> 33340644

A cross-industry collaboration to assess if acute oral toxicity (Q)SAR models are fit-for-purpose for GHS classification and labelling.

Joel Bercu1, Melisa J Masuda-Herrera1, Alejandra Trejo-Martin1, Catrin Hasselgren2, Jean Lord3, Jessica Graham4, Matthew Schmitz5, Lawrence Milchak6, Colin Owens6, Surya Hari Lal7, Richard Marchese Robinson7, Sarah Whalley7, Phillip Bellion8, Anna Vuorinen8, Kamila Gromek9, William A Hawkins10, Iris van de Gevel11, Kathleen Vriens11, Raymond Kemper12, Russell Naven12, Pierre Ferrer13, Glenn J Myatt14.   

Abstract

This study assesses whether currently available acute oral toxicity (AOT) in silico models, provided by the widely employed Leadscope software, are fit-for-purpose for categorization and labelling of chemicals. As part of this study, a large data set of proprietary and marketed compounds from multiple companies (pharmaceutical, plant protection products, and other chemical industries) was assembled to assess the models' performance. The absolute percentage of correct or more conservative predictions, based on a comparison of experimental and predicted GHS categories, was approximately 95%, after excluding a small percentage of inconclusive (indeterminate or out of domain) predictions. Since the frequency distribution across the experimental categories is skewed towards low toxicity chemicals, a balanced assessment was also performed. Across all compounds which could be assigned to a well-defined experimental category, the average percentage of correct or more conservative predictions was around 80%. These results indicate the potential for reliable and broad application of these models across different industrial sectors. This manuscript describes the evaluation of these models, highlights the importance of an expert review, and provides guidance on the use of AOT models to fulfill testing requirements, GHS classification/labelling, and transportation needs.
Copyright © 2020 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Acute oral Toxicity (Q)SAR; CLP/GHS GHS; Classification and labelling; Expert rule-based Statistical-based model; In silico 3Rs Expert review

Mesh:

Substances:

Year:  2020        PMID: 33340644      PMCID: PMC8005249          DOI: 10.1016/j.yrtph.2020.104843

Source DB:  PubMed          Journal:  Regul Toxicol Pharmacol        ISSN: 0273-2300            Impact factor:   3.271


  20 in total

1.  Establishing best practise in the application of expert review of mutagenicity under ICH M7.

Authors:  Chris Barber; Alexander Amberg; Laura Custer; Krista L Dobo; Susanne Glowienke; Jacky Van Gompel; Steve Gutsell; Jim Harvey; Masamitsu Honma; Michelle O Kenyon; Naomi Kruhlak; Wolfgang Muster; Lidiya Stavitskaya; Andrew Teasdale; Jonathan Vessey; Joerg Wichard
Journal:  Regul Toxicol Pharmacol       Date:  2015-08-04       Impact factor: 3.271

2.  Principles and procedures for implementation of ICH M7 recommended (Q)SAR analyses.

Authors:  Alexander Amberg; Lisa Beilke; Joel Bercu; Dave Bower; Alessandro Brigo; Kevin P Cross; Laura Custer; Krista Dobo; Eric Dowdy; Kevin A Ford; Susanne Glowienke; Jacky Van Gompel; James Harvey; Catrin Hasselgren; Masamitsu Honma; Robert Jolly; Raymond Kemper; Michelle Kenyon; Naomi Kruhlak; Penny Leavitt; Scott Miller; Wolfgang Muster; John Nicolette; Andreja Plaper; Mark Powley; Donald P Quigley; M Vijayaraj Reddy; Hans-Peter Spirkl; Lidiya Stavitskaya; Andrew Teasdale; Sandy Weiner; Dennie S Welch; Angela White; Joerg Wichard; Glenn J Myatt
Journal:  Regul Toxicol Pharmacol       Date:  2016-02-11       Impact factor: 3.271

Review 3.  Status of acute systemic toxicity testing requirements and data uses by U.S. regulatory agencies.

Authors:  Judy Strickland; Amy J Clippinger; Jeffrey Brown; David Allen; Abigail Jacobs; Joanna Matheson; Anna Lowit; Emily N Reinke; Mark S Johnson; Michael J Quinn; David Mattie; Suzanne C Fitzpatrick; Surender Ahir; Nicole Kleinstreuer; Warren Casey
Journal:  Regul Toxicol Pharmacol       Date:  2018-02-03       Impact factor: 3.271

4.  (Q)SAR assessments of potentially mutagenic impurities: a regulatory perspective on the utility of expert knowledge and data submission.

Authors:  Mark W Powley
Journal:  Regul Toxicol Pharmacol       Date:  2014-12-26       Impact factor: 3.271

5.  Variability in in vivo studies: Defining the upper limit of performance for predictions of systemic effect levels.

Authors:  Ly Ly Pham; Sean Watford; Prachi Pradeep; Matthew T Martin; Russell Thomas; Richard Judson; R Woodrow Setzer; Katie Paul Friedman
Journal:  Comput Toxicol       Date:  2020-08-01

6.  In silico toxicology protocols.

Authors:  Glenn J Myatt; Ernst Ahlberg; Yumi Akahori; David Allen; Alexander Amberg; Lennart T Anger; Aynur Aptula; Scott Auerbach; Lisa Beilke; Phillip Bellion; Romualdo Benigni; Joel Bercu; Ewan D Booth; Dave Bower; Alessandro Brigo; Natalie Burden; Zoryana Cammerer; Mark T D Cronin; Kevin P Cross; Laura Custer; Magdalena Dettwiler; Krista Dobo; Kevin A Ford; Marie C Fortin; Samantha E Gad-McDonald; Nichola Gellatly; Véronique Gervais; Kyle P Glover; Susanne Glowienke; Jacky Van Gompel; Steve Gutsell; Barry Hardy; James S Harvey; Jedd Hillegass; Masamitsu Honma; Jui-Hua Hsieh; Chia-Wen Hsu; Kathy Hughes; Candice Johnson; Robert Jolly; David Jones; Ray Kemper; Michelle O Kenyon; Marlene T Kim; Naomi L Kruhlak; Sunil A Kulkarni; Klaus Kümmerer; Penny Leavitt; Bernhard Majer; Scott Masten; Scott Miller; Janet Moser; Moiz Mumtaz; Wolfgang Muster; Louise Neilson; Tudor I Oprea; Grace Patlewicz; Alexandre Paulino; Elena Lo Piparo; Mark Powley; Donald P Quigley; M Vijayaraj Reddy; Andrea-Nicole Richarz; Patricia Ruiz; Benoit Schilter; Rositsa Serafimova; Wendy Simpson; Lidiya Stavitskaya; Reinhard Stidl; Diana Suarez-Rodriguez; David T Szabo; Andrew Teasdale; Alejandra Trejo-Martin; Jean-Pierre Valentin; Anna Vuorinen; Brian A Wall; Pete Watts; Angela T White; Joerg Wichard; Kristine L Witt; Adam Woolley; David Woolley; Craig Zwickl; Catrin Hasselgren
Journal:  Regul Toxicol Pharmacol       Date:  2018-04-17       Impact factor: 3.271

7.  Building predictive models for protein tyrosine phosphatase 1B inhibitors based on discriminating structural features by reassembling medicinal chemistry building blocks.

Authors:  Chihae Yang; Kevin Cross; Glenn J Myatt; Paul E Blower; James F Rathman
Journal:  J Med Chem       Date:  2004-11-18       Impact factor: 7.446

8.  Principles and procedures for handling out-of-domain and indeterminate results as part of ICH M7 recommended (Q)SAR analyses.

Authors:  Alexander Amberg; Roxanne V Andaya; Lennart T Anger; Chris Barber; Lisa Beilke; Joel Bercu; Dave Bower; Alessandro Brigo; Zoryanna Cammerer; Kevin P Cross; Laura Custer; Krista Dobo; Helga Gerets; Véronique Gervais; Susanne Glowienke; Stephen Gomez; Jacky Van Gompel; James Harvey; Catrin Hasselgren; Masamitsu Honma; Candice Johnson; Robert Jolly; Raymond Kemper; Michelle Kenyon; Naomi Kruhlak; Penny Leavitt; Scott Miller; Wolfgang Muster; Russell Naven; John Nicolette; Alexis Parenty; Mark Powley; Donald P Quigley; M Vijayaraj Reddy; Jennifer C Sasaki; Lidiya Stavitskaya; Andrew Teasdale; Alejandra Trejo-Martin; Sandy Weiner; Dennie S Welch; Angela White; Joerg Wichard; David Woolley; Glenn J Myatt
Journal:  Regul Toxicol Pharmacol       Date:  2018-12-15       Impact factor: 3.271

9.  ProTox: a web server for the in silico prediction of rodent oral toxicity.

Authors:  Malgorzata N Drwal; Priyanka Banerjee; Mathias Dunkel; Martin R Wettig; Robert Preissner
Journal:  Nucleic Acids Res       Date:  2014-05-16       Impact factor: 16.971

10.  Advances in acute toxicity testing: strengths, weaknesses and regulatory acceptance.

Authors:  Earnest Oghenesuvwe Erhirhie; Chibueze Peter Ihekwereme; Emmanuel Emeka Ilodigwe
Journal:  Interdiscip Toxicol       Date:  2018-08-06
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  3 in total

Review 1.  In Silico Models for Predicting Acute Systemic Toxicity.

Authors:  Ivanka Tsakovska; Antonia Diukendjieva; Andrew P Worth
Journal:  Methods Mol Biol       Date:  2022

2.  Evaluation of Variability Across Rat Acute Oral Systemic Toxicity Studies.

Authors:  Agnes L Karmaus; Kamel Mansouri; Kimberly T To; Bevin Blake; Jeremy Fitzpatrick; Judy Strickland; Grace Patlewicz; David Allen; Warren Casey; Nicole Kleinstreuer
Journal:  Toxicol Sci       Date:  2022-06-28       Impact factor: 4.109

3.  Corrigendum to a cross-industry collaboration to assess if acute toxicity (Q)SAR models are fit-for-purpose for GHS classification and labelling. Regulatory toxicology and pharmacology (2021) 104843.

Authors:  Joel Bercu; Melisa J Masuda Herrera; Alejandra Trejo-Martin; Catrin Hasselgren; Jean Lord; Jessica Graham; Matthew Schmitz; Lawrence Milchak; Colin Owens; Surya Hari Lal; Richard Marchese Robinson; Sarah Whalley; Phillip Bellion; Anna Vuorinen; Kamila Gromek; William A Hawkins; Iris Van de Gevel; Kathleen Vriens; Raymond Kemper; Russell Naven; Pierre Ferrer; Glenn J Myatt
Journal:  Regul Toxicol Pharmacol       Date:  2022-04-23       Impact factor: 3.598

  3 in total

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