| Literature DB >> 33336201 |
Lindsay Rutter1, Richard Barker2, Daniela Bezdan3, Henry Cope4, Sylvain V Costes5, Lovorka Degoricija6, Kathleen M Fisch7, Mariano I Gabitto8, Samrawit Gebre6, Stefania Giacomello9, Simon Gilroy2, Stefan J Green10, Christopher E Mason11,12,13,14, Sigrid S Reinsch5, Nathaniel J Szewczyk15, Deanne M Taylor16,17, Jonathan M Galazka5, Raul Herranz18, Masafumi Muratani1.
Abstract
Space agencies have announced plans for human missions to the Moon to prepare for Mars. However, the space environment presents stressors that include radiation, microgravity, and isolation. Understanding how these factors affect biology is crucial for safe and effective crewed space exploration. There is a need to develop countermeasures, to adapt plants and microbes for nutrient sources and bioregenerative life support, and to limit pathogen infection. Scientists across the world are conducting space omics experiments on model organisms and, more recently, on humans. Optimal extraction of actionable scientific discoveries from these precious datasets will only occur at the collective level with improved standardization. To address this shortcoming, we established ISSOP (International Standards for Space Omics Processing), an international consortium of scientists who aim to enhance standard guidelines between space biologists at a global level. Here we introduce our consortium and share past lessons learned and future challenges related to spaceflight omics.Entities:
Keywords: ESA; GeneLab; ISSOP; JAXA; NASA; Twins study; metadata; omics; space biology; standardization
Year: 2020 PMID: 33336201 PMCID: PMC7733874 DOI: 10.1016/j.patter.2020.100148
Source DB: PubMed Journal: Patterns (N Y) ISSN: 2666-3899
Figure 1Example Uses, Pros, and Cons of Various Model Organisms Used in Space Omics Experiments
Figure 2Roadmap of the Unique Challenges and Solutions during Each Stage of a Space Omics Experiment
Objectives, Deliverables, and Expected Impacts of ISSOP
| Community objectives | (1) Inform space biologists of recommended guidelines for space omics experiments; (2) Enhance information exchange between space biologists at the global level; (3) Reach a more diverse community of scientists and citizen scientists; (4) Incentivize engagement toward space omics and metadata standardization in the space biology research community; (5) Invite researchers committed to these values to join our efforts |
| Tangible deliverables | (1) Publish and routinely update our recommended sample-processing guidelines in a free and public repository; (2) Publish and routinely update lessons we have learned about space omics experiments in a free and public repository; (3) Upload key raw files, intermediate files, and final files using transparent and standardized data analysis pipelines for each dataset in the NASA GeneLab database; (4) Implement critical metadata standards for all datasets in the NASA GeneLab database |
| Shorter-term expected impacts | (1) Reduction in confounding factors and promotion of harmonization and interoperability between space omics datasets; (2) Increased accuracy when comparing between data, including historic spaceflight data with recently generated data, spaceflight analogue data with actual spaceflight data, and model organism data with human data; (3) Prevention of space biology researchers making the same expensive mistakes that have already been learned from other researchers; (4) Democratized access to priceless space omics data in various file formats accessible to both citizen scientists and seasoned bioinformaticians alike; (5) Accelerated derivation of valid hypotheses and novel discoveries related to the effects of space conditions on biological organisms |
| Longer-term expected impacts | (1) Improvements in hardware and software technology for future space omics experiments; (2) Advances in biological technologies, therapeutics, and countermeasures to support life in space; (3) Advances in biological technologies and therapeutics applicable to improvements of life on Earth |